BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0009.p (249 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q72XH9.1 Q72XH9_BACC1 Capsular polysaccharide biosynthesis protein 206 1e-51 C2MTG2.1 C2MTG2_BACCE Tyrosine-protein phosphatase ywqE 194 5e-48 B5V8X9.1 B5V8X9_BACCE Putative tyrosine-protein phosphatase CapC... 193 1e-47 B9IRQ5.1 B9IRQ5_BACCQ Phosphotyrosine-protein phosphatase (Capsu... 192 3e-47 C2W1U1.1 C2W1U1_BACCE Tyrosine-protein phosphatase ywqE 192 3e-47 >Q72XH9.1 Q72XH9_BACC1 Capsular polysaccharide biosynthesis protein Length = 255 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 145/224 (64%), Gaps = 3/224 (1%) Query: 23 ISAVVATPHHANGVYLNPAPNIGQAVEQLNQRLRQAGLPLQVLPGQEIRIYSDLLNDLEQ 82 I +VATPHH NG Y+N +I V+QLN L+Q +PL+VLPGQE+R+Y LL D E Sbjct: 34 IHTIVATPHHQNGKYVNERASIIHQVKQLNDELQQHEIPLKVLPGQEVRLYGGLLEDYEA 93 Query: 83 GQLLTL-AGSRYILLEMPSSRVPRSMEETCHELLIQGFVPVIAHPERNAEVAVDPSKLTR 141 G+++TL ++YI +E PS+ VPR E+ +EL ++G +P+I HPERNAE+ P KL Sbjct: 94 GKIVTLNETNKYIFIEFPSNHVPRYTEQLFYELRVKGMIPIIVHPERNAELIERPDKLYN 153 Query: 142 LIELGALGQLTAQSLAGTFGSKLQKLSLDLCRRNAVHVIASDAHDNQYRPFGLSEAYGVL 201 L+ GAL Q+TA SL G FG K+++ SL L N H+IASDAH+ R F L E+Y ++ Sbjct: 154 LVNKGALTQVTAGSLLGKFGKKIKRFSLQLVEHNLTHMIASDAHNTTSRGFHLEESYELI 213 Query: 202 TKELGTTASDLFRQNALRIVNNEEIIRADYLQSHKKLHRLFGFF 245 KE GTT + R+N I++ + I + D Q +K +LFG F Sbjct: 214 EKEFGTTVMNDLRENPYLIISGKAIYKEDPEQIRRK--KLFGIF 255 >C2MTG2.1 C2MTG2_BACCE Tyrosine-protein phosphatase ywqE Length = 255 Score = 194 bits (494), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 106/224 (47%), Positives = 145/224 (64%), Gaps = 3/224 (1%) Query: 23 ISAVVATPHHANGVYLNPAPNIGQAVEQLNQRLRQAGLPLQVLPGQEIRIYSDLLNDLEQ 82 I +VATPHH NG Y+N +I V+QLN L Q +PL+VLPGQE+R+Y DLL D E Sbjct: 34 IHTIVATPHHQNGKYVNERTSIIHQVKQLNDELEQHEIPLKVLPGQEVRLYGDLLEDYEA 93 Query: 83 GQLLTL-AGSRYILLEMPSSRVPRSMEETCHELLIQGFVPVIAHPERNAEVAVDPSKLTR 141 G+++TL ++YI +E PS+ VPR E+ +EL ++G +P+I HPERNAE+ P KL Sbjct: 94 GKIVTLNETNKYIFIEFPSNHVPRYTEQLLYELRVKGMIPIIVHPERNAELIERPDKLYN 153 Query: 142 LIELGALGQLTAQSLAGTFGSKLQKLSLDLCRRNAVHVIASDAHDNQYRPFGLSEAYGVL 201 L+ GAL Q+TA SL G FG K++K SL L N H+IASDAH+ R F L+E+Y ++ Sbjct: 154 LVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMIASDAHNTTTRGFHLAESYELI 213 Query: 202 TKELGTTASDLFRQNALRIVNNEEIIRADYLQSHKKLHRLFGFF 245 KE G T + R+N I+N + I + D Q +K +LFG F Sbjct: 214 EKEFGATVMNDLRENPYLIINGKAIYKEDPEQIRRK--KLFGIF 255 >B5V8X9.1 B5V8X9_BACCE Putative tyrosine-protein phosphatase CapC EC=3.1.3.48 Length = 255 Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 146/224 (65%), Gaps = 3/224 (1%) Query: 23 ISAVVATPHHANGVYLNPAPNIGQAVEQLNQRLRQAGLPLQVLPGQEIRIYSDLLNDLEQ 82 I +VATPHH NG Y+N +I V+QLN L+Q +PL+VLPGQE+R+Y DLL D E Sbjct: 34 IHTIVATPHHQNGKYVNERTSIIHQVKQLNDELQQHEIPLKVLPGQEVRLYGDLLEDYEA 93 Query: 83 GQLLTL-AGSRYILLEMPSSRVPRSMEETCHELLIQGFVPVIAHPERNAEVAVDPSKLTR 141 G+++TL ++YI +E PS+ VPR E+ +EL ++G +P+I HPERNAE+ P KL Sbjct: 94 GKIVTLNETNKYIFIEFPSNHVPRYTEQLLYELRVKGMIPIIVHPERNAELIERPDKLYN 153 Query: 142 LIELGALGQLTAQSLAGTFGSKLQKLSLDLCRRNAVHVIASDAHDNQYRPFGLSEAYGVL 201 L+ GAL Q+TA SL G FG K++K SL L N H+IASDAH+ R F L+E+Y ++ Sbjct: 154 LVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMIASDAHNTTTRGFHLAESYELI 213 Query: 202 TKELGTTASDLFRQNALRIVNNEEIIRADYLQSHKKLHRLFGFF 245 KE G T + R+N I++ + I + D Q +K +LFG F Sbjct: 214 AKEFGATVMNDLRENPYLIISGKAIYKEDPEQIRRK--KLFGIF 255 >B9IRQ5.1 B9IRQ5_BACCQ Phosphotyrosine-protein phosphatase (Capsular polysaccharide biosynthesis) Length = 255 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 146/224 (65%), Gaps = 3/224 (1%) Query: 23 ISAVVATPHHANGVYLNPAPNIGQAVEQLNQRLRQAGLPLQVLPGQEIRIYSDLLNDLEQ 82 I +VATPHH NG Y+N +I V+QLN L + +PL+VLPGQE+R+Y DLL D E Sbjct: 34 IHTIVATPHHQNGKYVNERTSIIHQVKQLNDELEKHEIPLKVLPGQEVRLYGDLLEDYEA 93 Query: 83 GQLLTL-AGSRYILLEMPSSRVPRSMEETCHELLIQGFVPVIAHPERNAEVAVDPSKLTR 141 G+++TL ++YI +E PS+ VPR E+ +EL ++G +P+I HPERNAE+ P+KL Sbjct: 94 GKIVTLNETNKYIFIEFPSNHVPRYAEQLLYELRVKGMIPIIVHPERNAELIERPAKLYN 153 Query: 142 LIELGALGQLTAQSLAGTFGSKLQKLSLDLCRRNAVHVIASDAHDNQYRPFGLSEAYGVL 201 L+ GAL Q+TA SL G FG K++K SL L N H+IASDAH+ R F L+E+Y ++ Sbjct: 154 LVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMIASDAHNTTSRGFHLAESYALI 213 Query: 202 TKELGTTASDLFRQNALRIVNNEEIIRADYLQSHKKLHRLFGFF 245 KE G T + R+N I++ + I + D Q +K +LFG F Sbjct: 214 EKEFGATVMNDLRENPYLIISGKAIYKEDPEQIRRK--KLFGIF 255 >C2W1U1.1 C2W1U1_BACCE Tyrosine-protein phosphatase ywqE Length = 255 Score = 192 bits (487), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/224 (46%), Positives = 146/224 (65%), Gaps = 3/224 (1%) Query: 23 ISAVVATPHHANGVYLNPAPNIGQAVEQLNQRLRQAGLPLQVLPGQEIRIYSDLLNDLEQ 82 I +VATPHH NG Y+N +I V+QLN L+Q +PL+VLPGQE+R+Y DLL D E Sbjct: 34 IHTIVATPHHQNGKYINERTSIIHGVKQLNDELQQHEIPLKVLPGQEVRLYGDLLEDYEA 93 Query: 83 GQLLTL-AGSRYILLEMPSSRVPRSMEETCHELLIQGFVPVIAHPERNAEVAVDPSKLTR 141 G+++TL ++YI +E PS+ VPR E+ +EL ++G +P+I HPERNAE+ P KL Sbjct: 94 GKIMTLNETNKYIFIEFPSNHVPRYAEQLLYELRVKGMIPIIVHPERNAELIERPDKLYN 153 Query: 142 LIELGALGQLTAQSLAGTFGSKLQKLSLDLCRRNAVHVIASDAHDNQYRPFGLSEAYGVL 201 L+ GAL Q+TA SL G FG K++K SL L N H+IASDAH+ R F L+E+Y ++ Sbjct: 154 LVNKGALTQVTAGSLLGKFGKKIKKFSLQLVEHNLTHMIASDAHNTTSRGFHLAESYELI 213 Query: 202 TKELGTTASDLFRQNALRIVNNEEIIRADYLQSHKKLHRLFGFF 245 KE G + + R+N I++ + I + D Q +K +LFG F Sbjct: 214 EKEFGASVMNDLRENPYLIISGKAIYKEDPEQIRRK--KLFGIF 255 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,540,139 Number of extensions: 48639612 Number of successful extensions: 146439 Number of sequences better than 1.0e-05: 484 Number of HSP's gapped: 146115 Number of HSP's successfully gapped: 484 Length of query: 249 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 117 Effective length of database: 1,817,122,223 Effective search space: 212603300091 Effective search space used: 212603300091 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)