BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0422.0006.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9M3.1 B1D9M3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 285 1e-75 B1DJF8.1 B1DJF8_9BACL Capsular exopolysaccharide family EC=2.7.10.2 246 1e-63 A4ITF3.1 A4ITF3_GEOTN Tyrosine-protein kinase (Capsular polysacc... 239 1e-61 C1PC45.1 C1PC45_BACCO Capsular exopolysaccharide family EC=2.7.10.2 236 8e-61 B1D9H3.1 B1D9H3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 232 2e-59 >B1D9M3.1 B1D9M3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 Length = 230 Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 130/206 (63%), Positives = 172/206 (83%) Query: 1 VTNPRSPVSEAFRALRTNIDFSSVDEQIQIIMVTSSGPEEGKSTVTANLAAAYAQADKKV 60 V NPRSPVSE +R LRTNI+F+++D +Q+IMV+S+GP EGKST ANLA ++Q+D+KV Sbjct: 13 VANPRSPVSETYRTLRTNIEFAAIDSALQVIMVSSAGPGEGKSTTIANLAVTFSQSDRKV 72 Query: 61 LLIDGDLRKPTAHKTFSLSNRAGLSSLLSQQADLEDVVQDSGVANLSIMTSGPIPPNPAE 120 +LID D+RKPTAHKTF +SNR GLSS++SQQ+ L++V+Q + + N+ ++T+GPIPPNPAE Sbjct: 73 VLIDADMRKPTAHKTFQISNRFGLSSVISQQSTLQEVIQATDIPNMDVITAGPIPPNPAE 132 Query: 121 MMASNRMSAVLQELRQRYDMILFDTPPLLAVTDAQIIASKSDGVIMVVSYGKVKRDIAAK 180 M+AS RM+A+L ELR YD++L DTPPLLAVTDAQI A+KSDGV++VV G+VKR A K Sbjct: 133 MLASKRMTALLDELRTMYDIVLVDTPPLLAVTDAQIAATKSDGVVLVVDQGRVKRQFAQK 192 Query: 181 AKANLDRVGAKMLGVVLNNVKRKASE 206 A NL V A++LGVVLNNVKR+++E Sbjct: 193 AIQNLQNVNARILGVVLNNVKRRSNE 218 >B1DJF8.1 B1DJF8_9BACL Capsular exopolysaccharide family EC=2.7.10.2 Length = 229 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 114/201 (56%), Positives = 154/201 (76%) Query: 3 NPRSPVSEAFRALRTNIDFSSVDEQIQIIMVTSSGPEEGKSTVTANLAAAYAQADKKVLL 62 NP SPV+EA+R LRTNI +SSVD IQ++M S+ EGKSTV +NLA AYA K+VLL Sbjct: 17 NPSSPVAEAYRTLRTNIQYSSVDAPIQLLMAASAQSGEGKSTVISNLAVAYALEGKRVLL 76 Query: 63 IDGDLRKPTAHKTFSLSNRAGLSSLLSQQADLEDVVQDSGVANLSIMTSGPIPPNPAEMM 122 ID DLRKPT H+ FS +NR GL++LL+ Q+ L++V++D G+ NL I+TSGP PPNPAE++ Sbjct: 77 IDTDLRKPTIHRIFSQTNRQGLTNLLTSQSTLQEVIKDGGIDNLEIITSGPTPPNPAELL 136 Query: 123 ASNRMSAVLQELRQRYDMILFDTPPLLAVTDAQIIASKSDGVIMVVSYGKVKRDIAAKAK 182 S+RM +L+ELR RYD+ILFDTPP+L VTD+ I++S DGV++V+ GKVK+ KAK Sbjct: 137 GSHRMKVILEELRARYDLILFDTPPVLPVTDSLIMSSYCDGVLLVIHAGKVKKAYVRKAK 196 Query: 183 ANLDRVGAKMLGVVLNNVKRK 203 LD V ++++G V N +KR+ Sbjct: 197 ERLDFVQSRIIGAVFNQMKRQ 217 >A4ITF3.1 A4ITF3_GEOTN Tyrosine-protein kinase (Capsular polysaccharide biosynthesis) Length = 232 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/205 (54%), Positives = 153/205 (74%), Gaps = 2/205 (0%) Query: 3 NPRSPVSEAFRALRTNIDFSSVDEQIQIIMVTSSGPEEGKSTVTANLAAAYAQADKKVLL 62 +P+SP+SE +R +RTNI FS +DE ++ +MVTSS P EGKST ANLA +AQ KK LL Sbjct: 21 DPKSPISEQYRTIRTNIQFSFIDEPLRSLMVTSSAPSEGKSTTAANLAVVFAQQGKKTLL 80 Query: 63 IDGDLRKPTAHKTFSLSNRAGLSSLLSQQADLEDVVQDSGVANLSIMTSGPIPPNPAEMM 122 +D DLRKPT H TF L+N AGL+S+L+ + L +QD+ V NL+++T+GPIPPNPAE++ Sbjct: 81 VDADLRKPTVHYTFRLNNYAGLTSVLTNASPLSSALQDTSVENLTVLTAGPIPPNPAELL 140 Query: 123 ASNRMSAVLQELRQRYDMILFDTPPLLAVTDAQIIASKSDGVIMVVSYGKVKRDIAAKAK 182 +S M +L+EL + YD+++FDTPP+LAVTDAQI+A+K D ++VVS G + D A KAK Sbjct: 141 SSKMMDRLLRELNEMYDLVIFDTPPVLAVTDAQILANKCDCTVLVVSSGNTETDAAVKAK 200 Query: 183 ANLDRVGAKMLGVVLNNVKRKASEG 207 L+ AK++GVVLN +RK EG Sbjct: 201 ELLEAANAKLVGVVLN--QRKQREG 223 >C1PC45.1 C1PC45_BACCO Capsular exopolysaccharide family EC=2.7.10.2 Length = 247 Score = 236 bits (603), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 107/199 (53%), Positives = 148/199 (74%) Query: 3 NPRSPVSEAFRALRTNIDFSSVDEQIQIIMVTSSGPEEGKSTVTANLAAAYAQADKKVLL 62 NP+SP+SE FR +RTNI FSSVD +Q++MVTSSGP EGKST+ NLA +AQ K+VLL Sbjct: 36 NPKSPISEQFRTIRTNISFSSVDNDLQLLMVTSSGPGEGKSTIVGNLAVVFAQQGKRVLL 95 Query: 63 IDGDLRKPTAHKTFSLSNRAGLSSLLSQQADLEDVVQDSGVANLSIMTSGPIPPNPAEMM 122 +D DLR+PT H TF ++N GL+++L++Q LE+ + V +L ++TSGPIPPNPAE++ Sbjct: 96 VDADLRRPTVHYTFGMTNTFGLTTVLTKQGTLEETAVKTDVDHLHVLTSGPIPPNPAELL 155 Query: 123 ASNRMSAVLQELRQRYDMILFDTPPLLAVTDAQIIASKSDGVIMVVSYGKVKRDIAAKAK 182 +S M +E +++YD+IL DTPP+LAVTDAQ++ ++ DG I+VVS GK + + KAK Sbjct: 156 SSKAMKEFFKEAKEQYDIILLDTPPVLAVTDAQVLTNQCDGTILVVSSGKAEVEAVKKAK 215 Query: 183 ANLDRVGAKMLGVVLNNVK 201 L+ A +LGVVLNN K Sbjct: 216 ELLESANANLLGVVLNNKK 234 >B1D9H3.1 B1D9H3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 Length = 228 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 103/201 (51%), Positives = 150/201 (74%) Query: 3 NPRSPVSEAFRALRTNIDFSSVDEQIQIIMVTSSGPEEGKSTVTANLAAAYAQADKKVLL 62 NP SP+SEA+R LRTN+ ++ D +Q++MVTS+GPEEGKST NLA YAQ +++ +L Sbjct: 16 NPTSPISEAYRTLRTNLQYAETDRPLQLLMVTSAGPEEGKSTTILNLAVTYAQMERRTIL 75 Query: 63 IDGDLRKPTAHKTFSLSNRAGLSSLLSQQADLEDVVQDSGVANLSIMTSGPIPPNPAEMM 122 +D DLRKPT+H F LSNR GLS +LS QADL +V++++ + L ++ SGP+PPNP+E++ Sbjct: 76 VDADLRKPTSHYNFGLSNRTGLSHVLSGQADLSEVIKETRIKGLDVLPSGPVPPNPSELL 135 Query: 123 ASNRMSAVLQELRQRYDMILFDTPPLLAVTDAQIIASKSDGVIMVVSYGKVKRDIAAKAK 182 S+RM +L +LR++YDM+L DTPP+LAV DAQ++A+K DGV++VV+ K+ A KAK Sbjct: 136 GSSRMEELLGKLREQYDMVLIDTPPVLAVADAQVVANKCDGVLLVVNARTGKKQHAIKAK 195 Query: 183 ANLDRVGAKMLGVVLNNVKRK 203 L V A+++G+ LN + Sbjct: 196 NALKFVQARIVGIALNQTAHR 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.128 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,026,645,946 Number of extensions: 35469188 Number of successful extensions: 111262 Number of sequences better than 1.0e-05: 1859 Number of HSP's gapped: 111121 Number of HSP's successfully gapped: 1862 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)