BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0033.p (234 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A7B058.1 A7B058_RUMGN Putative uncharacterized protein 307 4e-82 B7XZP6.1 B7XZP6_RUMHA Putative uncharacterized protein 303 1e-80 A5ZW51.1 A5ZW51_9FIRM Putative uncharacterized protein 300 8e-80 B1C015.1 B1C015_9FIRM Putative uncharacterized protein 298 2e-79 B5CPW8.1 B5CPW8_9FIRM Putative uncharacterized protein 298 3e-79 >A7B058.1 A7B058_RUMGN Putative uncharacterized protein Length = 234 Score = 307 bits (787), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 140/234 (59%), Positives = 187/234 (79%) Query: 1 MEPFIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQA 60 M+ F+K+E +T+ Y GE+ + AVD +DF+I KGEFVVI+GPSG+GK+T+LN+LGGMD A Sbjct: 1 MDTFVKLENITKIYHMGEVEIRAVDGIDFSIQKGEFVVIVGPSGAGKTTVLNILGGMDTA 60 Query: 61 TSGNIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDS 120 + G I VDG +I +S QL YRR+DIGFVFQFYNLIPNLTA ENVE+ +IC+N LD+ Sbjct: 61 SGGRITVDGQDITKYSERQLTGYRRDDIGFVFQFYNLIPNLTALENVEMALQICRNPLDA 120 Query: 121 TSVLNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMA 180 +VL VGLG R+ +FPA+LSGGEQQRVSIARA+ KNPKLLLCDEPTGALD TG I+ Sbjct: 121 RAVLKEVGLGERMDNFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYNTGKAILK 180 Query: 181 TLWEMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 L EMC++ G TVI++THN+A+A AD++I++K+GKV +++++ P+ + E+ W Sbjct: 181 LLQEMCREKGMTVIVITHNSALAPMADRLIKIKNGKVSSMKVNENPISIDEIEW 234 >B7XZP6.1 B7XZP6_RUMHA Putative uncharacterized protein Length = 234 Score = 303 bits (775), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 137/234 (58%), Positives = 185/234 (79%) Query: 1 MEPFIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQA 60 ME ++K+E VT+ Y+ GE+ + A D +DF+I+KGEFVVI+GPSG+GK+T+LN+LGGMD A Sbjct: 1 MEDYVKLENVTKVYKMGEVEIRAADGIDFSISKGEFVVIVGPSGAGKTTVLNILGGMDTA 60 Query: 61 TSGNIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDS 120 T G ++VDG ++A ++ L YRR+DIGFVFQFYNL+PNLTA ENVE+ +ICK LD+ Sbjct: 61 TEGKVLVDGKDVAKYTPKMLTGYRRDDIGFVFQFYNLVPNLTALENVELALQICKEPLDA 120 Query: 121 TSVLNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMA 180 SVL VGLG RL +FPA+LSGGEQQRVSIARA+ KNPKLLLCDEPTGALD TG I+ Sbjct: 121 KSVLEDVGLGDRLDNFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYNTGKAILK 180 Query: 181 TLWEMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 L + C++ G TVI++THN+AIA AD++I +K+G+V ++++ P+P+ + W Sbjct: 181 LLQDTCRQKGMTVIVITHNSAIAPMADRIIHIKNGRVSGMELNPNPVPVETIEW 234 >A5ZW51.1 A5ZW51_9FIRM Putative uncharacterized protein Length = 238 Score = 300 bits (768), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 136/231 (58%), Positives = 184/231 (79%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 ++K++KV++ Y+ GE+ + AVD + F I+KGEFVV++GPSG+GK+T+LN+LGGMD AT G Sbjct: 8 YVKLDKVSKIYKMGEVEIRAVDNISFEISKGEFVVVVGPSGAGKTTVLNILGGMDTATKG 67 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 N+ VDG+NIA ++ QL YRR+DIGFVFQFYNL+PNLTA ENVE+ +ICKN LD+ V Sbjct: 68 NVFVDGSNIAKYNNRQLTAYRRDDIGFVFQFYNLVPNLTALENVELAMQICKNPLDAKKV 127 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 L VGL R+ +FPA+LSGGEQQRVSIARA+ KNPKLLLCDEPTGALD TG I+ L Sbjct: 128 LCEVGLEDRMGNFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYQTGKAILKLLQ 187 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 +MC++ G TVI++THN+A+ AD+VI +K+G V ++++ +P P+ E+ W Sbjct: 188 DMCREKGMTVIVITHNSALTPMADRVIHIKNGTVSAMELNTDPTPVEEIEW 238 >B1C015.1 B1C015_9FIRM Putative uncharacterized protein Length = 234 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 141/234 (60%), Positives = 178/234 (76%) Query: 1 MEPFIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQA 60 M FI + V + Y+ G++ + A D +DF I KGEFVVI+GPSG+GK+T+LNLLGGMD+A Sbjct: 1 MNSFIVFDNVKKTYKVGDIEINASDGVDFNIQKGEFVVIVGPSGAGKTTILNLLGGMDKA 60 Query: 61 TSGNIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDS 120 TSG I+VDG ++A +S QL YRRNDIGFVFQFYNL+ NLTA ENVE+ +I KN LD Sbjct: 61 TSGRILVDGKDVAKYSERQLTQYRRNDIGFVFQFYNLVQNLTALENVELATQISKNPLDV 120 Query: 121 TSVLNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMA 180 VL VGL R+++FPA+LSGGEQQRV+IARAI KNPKLLLCDEPTGALD TG I+A Sbjct: 121 KMVLKRVGLENRMNNFPAQLSGGEQQRVAIARAIAKNPKLLLCDEPTGALDYQTGKAILA 180 Query: 181 TLWEMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 L EMC K TVI++THN+A+A AD++I LK+G+V I++ P P+ E+ W Sbjct: 181 LLREMCNKYKMTVIVITHNSALAPMADRIIHLKNGRVASSAINENPKPIEEIEW 234 >B5CPW8.1 B5CPW8_9FIRM Putative uncharacterized protein Length = 233 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 135/231 (58%), Positives = 183/231 (79%) Query: 4 FIKIEKVTRQYETGEMTVTAVDKMDFTINKGEFVVILGPSGSGKSTLLNLLGGMDQATSG 63 F+ ++++T+ Y+ GE+ + AVD + F+I KGEFVVI+GPSG+GK+T+LN+LGGMD ATSG Sbjct: 3 FVILDEITKTYKMGEVEIHAVDHISFSIEKGEFVVIVGPSGAGKTTVLNILGGMDTATSG 62 Query: 64 NIIVDGANIAGFSIDQLCNYRRNDIGFVFQFYNLIPNLTAKENVEVTRKICKNVLDSTSV 123 +IVDG +I + +L YRR+DIGFVFQFYNL+PNLTA ENVE+ +ICK+ LD+ +V Sbjct: 63 KLIVDGQDITSYDSKKLTGYRRDDIGFVFQFYNLVPNLTAVENVELALQICKDPLDAETV 122 Query: 124 LNSVGLGGRLHHFPAELSGGEQQRVSIARAICKNPKLLLCDEPTGALDSVTGALIMATLW 183 L VGLG RL +FPA+LSGGEQQRVSIARA+ KNPKLLLCDEPTGALD TG I+ L Sbjct: 123 LEEVGLGKRLKNFPAQLSGGEQQRVSIARALAKNPKLLLCDEPTGALDYNTGKAILKLLQ 182 Query: 184 EMCKKNGQTVIIVTHNAAIAETADKVIRLKDGKVLEVQIHKEPLPMSEVSW 234 MC++ G TVI++THN A+A AD++I +K+G+V ++Q++ P+ + E+ W Sbjct: 183 NMCREKGMTVIVITHNQALAPMADRLIHIKNGQVSKMQVNDNPVSIDEIEW 233 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,356,717,155 Number of extensions: 54079324 Number of successful extensions: 551922 Number of sequences better than 1.0e-05: 94589 Number of HSP's gapped: 419522 Number of HSP's successfully gapped: 101513 Length of query: 234 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 103 Effective length of database: 1,826,543,238 Effective search space: 188133953514 Effective search space used: 188133953514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)