BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0029.p
         (186 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKR3.1 B3KKR3_9BACI Putative uncharacterized protein                145   1e-33
B1DFD2.1 B1DFD2_9BACL Putative uncharacterized protein                136   7e-31
Q65FB6.1 Q65FB6_BACLD YutD                                            114   4e-24
A7Z8E7.1 A7Z8E7_BACA2 YutD                                            112   2e-23
B1YKX8.1 B1YKX8_EXIS2 Putative uncharacterized protein                112   2e-23

>B3KKR3.1 B3KKR3_9BACI Putative uncharacterized protein
          Length = 179

 Score =  145 bits (366), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 68/78 (87%)

Query: 2  DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
          DH++GWN EAFR RYSEVLDRYDYI+GDWGY+QLRLKGFYRDNHPK  +D+  S M DYI
Sbjct: 14 DHRNGWNLEAFRERYSEVLDRYDYIVGDWGYNQLRLKGFYRDNHPKAAKDSTFSSMSDYI 73

Query: 62 NEYCNFGCAYFVLHKLKE 79
          NEYCNFGCA+FVL K KE
Sbjct: 74 NEYCNFGCAHFVLQKTKE 91


>B1DFD2.1 B1DFD2_9BACL Putative uncharacterized protein
          Length = 250

 Score =  136 bits (343), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 77/106 (72%), Gaps = 11/106 (10%)

Query: 2   DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
           ++++GWN +AF+ RYSEVL+RYD+IIGDWGYSQLRLKGF+RDNH K  +D+A SGM DY+
Sbjct: 14  ENRNGWNADAFKDRYSEVLERYDFIIGDWGYSQLRLKGFFRDNHMKATKDSAYSGMSDYV 73

Query: 62  NEYCNFGCAYFVLHKLKETPKEGSFKDILTKEAPEPGTDDEMEQTS 107
           NEYCNFGCAYFVL K     K           +P+  + DE E +S
Sbjct: 74  NEYCNFGCAYFVLEKTGTAAK-----------SPDEESGDEQEASS 108


>Q65FB6.1 Q65FB6_BACLD YutD
          Length = 91

 Score =  114 bits (285), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 64/78 (82%)

Query: 2  DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
          D K+G+N EAF+ RYS++L++YDYI+GDWGYSQLRLKGF+ D + K   DT IS + +YI
Sbjct: 14 DVKNGFNEEAFKARYSDILNKYDYIVGDWGYSQLRLKGFFDDQNQKATFDTKISTLDEYI 73

Query: 62 NEYCNFGCAYFVLHKLKE 79
           EYCNFGCAYFVL +L++
Sbjct: 74 YEYCNFGCAYFVLKRLRK 91


>A7Z8E7.1 A7Z8E7_BACA2 YutD
          Length = 102

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 47/78 (60%), Positives = 64/78 (82%)

Query: 2   DHKDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYI 61
           D K+G+N EAF+ RYS++L++YDYI+GDWGYSQLRLKGF+ D + K   +T IS + +YI
Sbjct: 25  DFKNGFNEEAFKARYSDILNKYDYIVGDWGYSQLRLKGFFDDQNQKATFETKISTLDEYI 84

Query: 62  NEYCNFGCAYFVLHKLKE 79
            EYCNFGCAYFVL ++++
Sbjct: 85  YEYCNFGCAYFVLKRIRK 102


>B1YKX8.1 B1YKX8_EXIS2 Putative uncharacterized protein
          Length = 126

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 62/75 (82%)

Query: 4  KDGWNPEAFRGRYSEVLDRYDYIIGDWGYSQLRLKGFYRDNHPKVNRDTAISGMVDYINE 63
          ++G+N EAF GR+S+VL++YDYI+GDWG+ QLRL+GFY DNH K   DT IS + DY+ E
Sbjct: 16 REGFNEEAFIGRFSDVLEKYDYIVGDWGHGQLRLRGFYDDNHEKATFDTKISHVADYLYE 75

Query: 64 YCNFGCAYFVLHKLK 78
          YCNFGCAYF++ +++
Sbjct: 76 YCNFGCAYFIVKRME 90


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.133    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,089,056,523
Number of extensions: 41493714
Number of successful extensions: 80086
Number of sequences better than 1.0e-05: 258
Number of HSP's gapped: 80003
Number of HSP's successfully gapped: 258
Length of query: 186
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 58
Effective length of database: 1,854,806,283
Effective search space: 107578764414
Effective search space used: 107578764414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 127 (53.5 bits)