BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0028.p (215 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K750.1 B3K750_9BACI Putative uncharacterized protein 331 3e-89 Q5WKN4.1 Q5WKN4_BACSK Putative uncharacterized protein 310 4e-83 B1D4T3.1 B1D4T3_9BACL Putative uncharacterized protein 206 1e-51 C0Z946.1 C0Z946_BREBN Hypothetical membrane protein 201 4e-50 Q65N22.1 Q65N22_BACLD Putative uncharacterized protein 196 2e-48 >B3K750.1 B3K750_9BACI Putative uncharacterized protein Length = 214 Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/215 (74%), Positives = 182/215 (84%), Gaps = 1/215 (0%) Query: 1 MEKRKILYGLLACVSIVFILYALTENYLIDPGAGAFLSHKTGLKRELNLPVWLNVMHVHV 60 M+KRK LY LLACVS+VFILYAL +NY IDPGA FLS KTGLKRELNLPVWLNVM+VHV Sbjct: 1 MKKRKSLYRLLACVSLVFILYALVKNYWIDPGAAGFLSRKTGLKRELNLPVWLNVMYVHV 60 Query: 61 AFACIAMAAGLLNFSNRIFEKSRKFHRINGXXXXXXXXXXXXTSGYMAPYATGGKISSMG 120 FAC+AMA+GL+NFSNR+FEKSR+FHR NG TSGYMAPYATGGKISSMG Sbjct: 61 GFACLAMASGLINFSNRMFEKSRRFHRFNGYVYLVSVLLVVLTSGYMAPYATGGKISSMG 120 Query: 121 FNALNIIWLLITIMALVQIKKKRIIRHRNWMIRSYAFCFTNMLIHLITALFHQGFGLVYA 180 FNALN+IWL +T+ AL+QIK+KRI RHRNWMIRSYAFCFTN+LIHLIT+L HQGFG+VYA Sbjct: 121 FNALNLIWLFVTMTALIQIKRKRIDRHRNWMIRSYAFCFTNLLIHLITSLVHQGFGMVYA 180 Query: 181 TSYIIGVYGSIALLLVIPNIIIRTIGRSREVAVTP 215 TSY IG+YGSIALL+VIP IIIRT R+ + + P Sbjct: 181 TSYTIGLYGSIALLIVIPEIIIRT-NRTEKNELIP 214 >Q5WKN4.1 Q5WKN4_BACSK Putative uncharacterized protein Length = 212 Score = 310 bits (795), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 148/206 (71%), Positives = 172/206 (83%) Query: 1 MEKRKILYGLLACVSIVFILYALTENYLIDPGAGAFLSHKTGLKRELNLPVWLNVMHVHV 60 M K+K+ + LL C+SIVFI+YA NY+IDPGA FLSHKTGL RELN+PVWLNVM++HV Sbjct: 1 MNKQKMFFRLLVCISIVFIVYAFVYNYVIDPGAETFLSHKTGLTRELNVPVWLNVMYIHV 60 Query: 61 AFACIAMAAGLLNFSNRIFEKSRKFHRINGXXXXXXXXXXXXTSGYMAPYATGGKISSMG 120 AFAC+AMAAGLLNFS RIF KSRKFHR+NG TSGYMAPYATGGKI S+G Sbjct: 61 AFACVAMAAGLLNFSKRIFAKSRKFHRLNGYLYFVSVFIVVLTSGYMAPYATGGKIVSIG 120 Query: 121 FNALNIIWLLITIMALVQIKKKRIIRHRNWMIRSYAFCFTNMLIHLITALFHQGFGLVYA 180 FNA+NIIW LITI+ALVQIKKKR+ +HRNWMIRSYAFCFTNM++HLITA+ ++GFGL Y Sbjct: 121 FNAINIIWPLITIIALVQIKKKRMTQHRNWMIRSYAFCFTNMVLHLITAMVNRGFGLDYP 180 Query: 181 TSYIIGVYGSIALLLVIPNIIIRTIG 206 TSY IGVYG+I +LLVIP I+IR IG Sbjct: 181 TSYTIGVYGAIVVLLVIPPIVIRLIG 206 >B1D4T3.1 B1D4T3_9BACL Putative uncharacterized protein Length = 209 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 104/210 (49%), Positives = 139/210 (66%), Gaps = 3/210 (1%) Query: 1 MEKRKILYGLLACVSIVFILYALTENYLIDPGAGAFLSHKTGLKRELNLPVWLNVMHVHV 60 M+KRK LY L VSI FI Y N++ DP A FL HKTGLK ++ +WL +M VH+ Sbjct: 1 MKKRKTLYILTIAVSIGFIGYTTFTNFIYDPEASRFLRHKTGLK---HVSLWLTIMDVHI 57 Query: 61 AFACIAMAAGLLNFSNRIFEKSRKFHRINGXXXXXXXXXXXXTSGYMAPYATGGKISSMG 120 AC AM AGL+NFS RI E+S K HRI G TSGYMAP++TGG+++S+ Sbjct: 58 VAACAAMIAGLINFSRRIRERSAKLHRILGYTYVLAVAIVDLTSGYMAPFSTGGRMNSIA 117 Query: 121 FNALNIIWLLITIMALVQIKKKRIIRHRNWMIRSYAFCFTNMLIHLITALFHQGFGLVYA 180 FN +N+IWL+IT++A+V+I+K ++ HR WMIRSY F FTN+ HL+TA H G G+ Y Sbjct: 118 FNFINMIWLVITVIAVVKIRKGKVAEHRKWMIRSYVFVFTNLFTHLVTAALHNGIGVDYT 177 Query: 181 TSYIIGVYGSIALLLVIPNIIIRTIGRSRE 210 SY I +Y +I LLL++ ++IR I E Sbjct: 178 LSYTIAIYSTIVLLLLLAEVVIRKIKTDPE 207 >C0Z946.1 C0Z946_BREBN Hypothetical membrane protein Length = 212 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 97/206 (47%), Positives = 138/206 (66%), Gaps = 1/206 (0%) Query: 8 YGLLACVSIVFILYALTENYLIDPGAGAFLSHKTGLKRE-LNLPVWLNVMHVHVAFACIA 66 Y ++ V+ + I YAL +N++IDP A FLSHK+ +E +N +WL VM+VH+ FA IA Sbjct: 7 YSMVIFVACIAITYALVQNFIIDPEAKGFLSHKSDFNKERMNTSIWLTVMYVHLFFALIA 66 Query: 67 MAAGLLNFSNRIFEKSRKFHRINGXXXXXXXXXXXXTSGYMAPYATGGKISSMGFNALNI 126 + G+ NFS+++ + RK H++ G TSGYMAPY TGGK++S F+ LNI Sbjct: 67 LICGVANFSDKLLAQKRKLHKVTGYVYLFSVLVVVVTSGYMAPYVTGGKVASWPFHLLNI 126 Query: 127 IWLLITIMALVQIKKKRIIRHRNWMIRSYAFCFTNMLIHLITALFHQGFGLVYATSYIIG 186 IW ITI ALV+IKK+++++H+ WM+RS+ F FTNMLIHL+ + + GL Y SY IG Sbjct: 127 IWPAITITALVKIKKRQVMKHKEWMVRSFVFLFTNMLIHLMKLIVEKVVGLPYELSYTIG 186 Query: 187 VYGSIALLLVIPNIIIRTIGRSREVA 212 VY ++ L+V IIIRT R+R+ A Sbjct: 187 VYAALIGLVVTAEIIIRTKLRARKKA 212 >Q65N22.1 Q65N22_BACLD Putative uncharacterized protein Length = 211 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 89/191 (46%), Positives = 128/191 (67%) Query: 17 VFILYALTENYLIDPGAGAFLSHKTGLKRELNLPVWLNVMHVHVAFACIAMAAGLLNFSN 76 V++LY L EN ++DP + +FLSHK+ L+ +LP+WL VM+VHV AC+AM +G +NFS+ Sbjct: 7 VYVLYTLFENLILDPQSTSFLSHKSHLRDSFHLPIWLKVMYVHVIAACLAMVSGAVNFSS 66 Query: 77 RIFEKSRKFHRINGXXXXXXXXXXXXTSGYMAPYATGGKISSMGFNALNIIWLLITIMAL 136 + KSRK HR+NG +SGYMAP++TGG+ S+ FN +N+ W T++++ Sbjct: 67 GLLAKSRKIHRLNGFIYVVSVMVVTLSSGYMAPHSTGGRAVSIAFNMVNMYWPAATVISV 126 Query: 137 VQIKKKRIIRHRNWMIRSYAFCFTNMLIHLITALFHQGFGLVYATSYIIGVYGSIALLLV 196 ++ ++ + +HRNWMIRSY FCFTN+ IH IT + GFGL Y SY IGVYG+IAL + Sbjct: 127 IKARRNQFTKHRNWMIRSYLFCFTNLFIHFITFVCRSGFGLPYDISYTIGVYGAIALNVA 186 Query: 197 IPNIIIRTIGR 207 +I R Sbjct: 187 AAEFVIHFTRR 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,155,151,385 Number of extensions: 41729617 Number of successful extensions: 121781 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 121719 Number of HSP's successfully gapped: 83 Length of query: 215 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 85 Effective length of database: 1,835,964,253 Effective search space: 156056961505 Effective search space used: 156056961505 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)