BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0027.p
         (232 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K749.1 B3K749_9BACI ThiJ/PfpI domain protein                        236   1e-60
Q5WKN5.1 Q5WKN5_BACSK Putative uncharacterized protein                227   5e-58
Q0S785.1 Q0S785_RHOSR Putative uncharacterized protein                 92   3e-17
Q0S786.1 Q0S786_RHOSR Putative uncharacterized protein                 81   7e-14
A3Q1Z7.1 A3Q1Z7_MYCSJ Putative uncharacterized protein                 81   7e-14

>B3K749.1 B3K749_9BACI ThiJ/PfpI domain protein
          Length = 345

 Score =  236 bits (602), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/184 (64%), Positives = 140/184 (76%), Gaps = 1/184 (0%)

Query: 50  GXXXXGGGVTSGLDVALYLVERELGPRIAHAVEQLFEYERRGTVWREEGIAPSSHMAVTH 109
           G    GGGVTSGLDVALYLVERELGPRIAHAVEQLFEYERRGTVW+  G+APS+  ++  
Sbjct: 162 GSLVTGGGVTSGLDVALYLVERELGPRIAHAVEQLFEYERRGTVWKGIGLAPSTQKSLPD 221

Query: 110 EETNIVTIKAGMIYDTLNIKSLRE-SDFDGDWDTTIATPVGKLEVKFSISTRNGMIQGQA 168
           +         GM+ +  +   L + S F+GDWDT IATPVGK+EV+ SIS RN +I+G A
Sbjct: 222 DNEPNAAANHGMLTNPASGYQLTQASMFEGDWDTIIATPVGKMEVRLSISARNDIIEGTA 281

Query: 169 TQGDETVEFITPVLQDNKLTWSLRITKPMRLNLKFEVAVSGDQMIGIARAGILPASKLTG 228
           TQGDET++F +PVLQ+ KL WSL ITKPMRLNLKFEV   GD M G A+AG+LPASKLTG
Sbjct: 282 TQGDETIQFRSPVLQNGKLAWSLPITKPMRLNLKFEVTADGDVMTGSAKAGMLPASKLTG 341

Query: 229 KRVS 232
            RVS
Sbjct: 342 TRVS 345


>Q5WKN5.1 Q5WKN5_BACSK Putative uncharacterized protein
          Length = 344

 Score =  227 bits (579), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 114/182 (62%), Positives = 137/182 (75%)

Query: 50  GXXXXGGGVTSGLDVALYLVERELGPRIAHAVEQLFEYERRGTVWREEGIAPSSHMAVTH 109
           G     GGVTSGLD+ALYLVERELGPRIAHAVEQLFE+ERRGTVWR+ G+ P    A   
Sbjct: 162 GNFVSSGGVTSGLDLALYLVERELGPRIAHAVEQLFEFERRGTVWRDVGLVPRHGTAKAE 221

Query: 110 EETNIVTIKAGMIYDTLNIKSLRESDFDGDWDTTIATPVGKLEVKFSISTRNGMIQGQAT 169
           ++ N  T K G     +  +S   S F+G+W T I TP+GKL+V  SIST    I+G+AT
Sbjct: 222 DDENSTTNKVGHTDSAMLNQSRIASIFEGEWATEIMTPIGKLDVALSISTDKETIRGKAT 281

Query: 170 QGDETVEFITPVLQDNKLTWSLRITKPMRLNLKFEVAVSGDQMIGIARAGILPASKLTGK 229
           QG+ETV+FI PV+Q NKLTWSL ITKP+RLNLKFEV+V GD+MIG A+AG+LPASKL GK
Sbjct: 282 QGEETVQFIHPVIQGNKLTWSLPITKPLRLNLKFEVSVDGDKMIGTAKAGVLPASKLIGK 341

Query: 230 RV 231
           R+
Sbjct: 342 RI 343


>Q0S785.1 Q0S785_RHOSR Putative uncharacterized protein
          Length = 102

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 63/94 (67%)

Query: 137 DGDWDTTIATPVGKLEVKFSISTRNGMIQGQATQGDETVEFITPVLQDNKLTWSLRITKP 196
           DG W+  IATP+ K  V+ +  T++G ++G A    E V    P L  N+LTWS  ITKP
Sbjct: 4   DGTWNVVIATPISKQRVELTFVTQDGELRGIARGAAEEVPLTDPTLDGNRLTWSQSITKP 63

Query: 197 MRLNLKFEVAVSGDQMIGIARAGILPASKLTGKR 230
           +RL+L+F+V V GD+M G + AG LP+SK++G+R
Sbjct: 64  LRLHLQFDVLVEGDEMTGKSTAGRLPSSKVSGRR 97


>Q0S786.1 Q0S786_RHOSR Putative uncharacterized protein
          Length = 217

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 42/54 (77%)

Query: 50  GXXXXGGGVTSGLDVALYLVERELGPRIAHAVEQLFEYERRGTVWREEGIAPSS 103
           G      GVTSGLD+ LYL+ERELGPRIAHAVE LF YERRGTVWR  G+ P++
Sbjct: 163 GDLVTAAGVTSGLDLGLYLLERELGPRIAHAVETLFAYERRGTVWRARGLEPTT 216


>A3Q1Z7.1 A3Q1Z7_MYCSJ Putative uncharacterized protein
          Length = 105

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 138 GDWDTTIATPVGKLEVKFSISTRNGMIQGQATQGDETVEFITPVLQD----NKLTWSLRI 193
           G WD  I TP+G L   +      G ++G AT  DETV      + D     ++TW   +
Sbjct: 6   GQWDVRIRTPIGSLSTTYEFVVDGGALRGSATSRDETVALHDITVTDEPDGQRVTWRQSV 65

Query: 194 TKPMRLNLKFEVAVSGDQMIGIARAGILPASKLTGKR 230
           T+PMRL+L F+V V+GD+M G +RAG LP S +TG R
Sbjct: 66  TRPMRLHLAFDVVVAGDRMTGHSRAGRLPRSAVTGVR 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,271,402,934
Number of extensions: 49459663
Number of successful extensions: 97103
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 97098
Number of HSP's successfully gapped: 26
Length of query: 232
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 101
Effective length of database: 1,826,543,238
Effective search space: 184480867038
Effective search space used: 184480867038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)