BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0024.p
         (70 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4L4G8.1 C4L4G8_EXISA Thioredoxin                                      79   2e-13
C1PAD0.1 C1PAD0_BACCO Thioredoxin                                      78   2e-13
C3IXX7.1 C3IXX7_9BACI Thioredoxin                                      77   4e-13
B7Y696.1 B7Y696_9BACI Thioredoxin                                      77   4e-13
Q5KWG6.1 Q5KWG6_GEOKA Thioredoxin (TRX)                                75   1e-12

>C4L4G8.1 C4L4G8_EXISA Thioredoxin
          Length = 104

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 51/69 (73%)

Query: 1   MFAPVLEEFEKEANDSIKVVKVNVDENPVTSSLFQIMSIPATIIFKDGKPLYKELGILPK 60
           M APVLEE ++E  D +++VK++VDENP  +  FQI SIP  ++FKDG+P+ K +G  PK
Sbjct: 34  MIAPVLEELDQEMGDQVQIVKLDVDENPEVAGAFQIQSIPTLMMFKDGEPVSKTMGFQPK 93

Query: 61  GALQQLVAS 69
            AL++ +A+
Sbjct: 94  EALKEFIAT 102


>C1PAD0.1 C1PAD0_BACCO Thioredoxin
          Length = 104

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query: 1   MFAPVLEEFEKEANDSIKVVKVNVDENPVTSSLFQIMSIPATIIFKDGKPLYKELGILPK 60
           M APVLEE + E  D +K+VKV+VDEN  T+S F +MSIP  ++ KDGKP+ K +G  PK
Sbjct: 34  MIAPVLEEIDAEMGDKVKIVKVDVDENQETTSKFGVMSIPTLVLMKDGKPVDKVIGYQPK 93

Query: 61  GALQQLV 67
            ALQ+LV
Sbjct: 94  EALQELV 100


>C3IXX7.1 C3IXX7_9BACI Thioredoxin
          Length = 105

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 1   MFAPVLEEFEKEANDSIKVVKVNVDENPVTSSLFQIMSIPATIIFKDGKPLYKELGILPK 60
           M APVLEE ++E  D +K+VKVNVDEN  T+S F +MSIP  ++FKDG+ + K +G  PK
Sbjct: 34  MIAPVLEELDREMGDKVKIVKVNVDENQETASKFGVMSIPTLLLFKDGQLVDKAVGYQPK 93

Query: 61  GALQQLVA 68
            AL QLV 
Sbjct: 94  EALVQLVG 101


>B7Y696.1 B7Y696_9BACI Thioredoxin
          Length = 105

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 49/68 (72%)

Query: 1   MFAPVLEEFEKEANDSIKVVKVNVDENPVTSSLFQIMSIPATIIFKDGKPLYKELGILPK 60
           M APVLEE ++E  D +K+VKVNVDEN  T+S F +MSIP  ++FKDG+ + K +G  PK
Sbjct: 34  MIAPVLEELDREMGDKVKIVKVNVDENQETASKFGVMSIPTLLLFKDGQLVDKAVGYQPK 93

Query: 61  GALQQLVA 68
            AL QLV 
Sbjct: 94  EALVQLVG 101


>Q5KWG6.1 Q5KWG6_GEOKA Thioredoxin (TRX)
          Length = 105

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 49/68 (72%)

Query: 1   MFAPVLEEFEKEANDSIKVVKVNVDENPVTSSLFQIMSIPATIIFKDGKPLYKELGILPK 60
           M APVLEE ++E  D +K+VKVNVDEN  T+S F +MSIP  ++FK+G+ + K +G  PK
Sbjct: 34  MIAPVLEELDREMGDKVKIVKVNVDENQETASKFGVMSIPTLLVFKNGELVDKAIGYQPK 93

Query: 61  GALQQLVA 68
            AL QLV 
Sbjct: 94  EALVQLVG 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.135    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 384,275,911
Number of extensions: 12216889
Number of successful extensions: 40002
Number of sequences better than 1.0e-05: 1010
Number of HSP's gapped: 40096
Number of HSP's successfully gapped: 1012
Length of query: 70
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 29
Effective length of database: 2,674,434,588
Effective search space: 77558603052
Effective search space used: 77558603052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)