BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0023.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DK48.1 B1DK48_9BACL FAD-dependent pyridine nucleotide-disulphi... 372 e-101 B1D9J6.1 B1D9J6_9BACL FAD-dependent pyridine nucleotide-disulphi... 328 4e-88 Q2B7T5.1 Q2B7T5_9BACI Thioredoxin reductase 325 3e-87 Q5WIH0.1 Q5WIH0_BACSK Thioredoxin reductase 306 1e-81 B4AI26.1 B4AI26_BACPU Thioredoxin-disulfide reductase 295 2e-78 >B1DK48.1 B1DK48_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 303 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 177/301 (58%), Positives = 226/301 (75%), Gaps = 2/301 (0%) Query: 1 LSYDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRR 60 + YD AIIGGGPAGLNAALVLGRAR++VA+FDN+QPRN VTHASHGFITRDGV PAEFRR Sbjct: 1 MRYDVAIIGGGPAGLNAALVLGRARKTVAIFDNAQPRNRVTHASHGFITRDGVKPAEFRR 60 Query: 61 IAYEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGL 120 IAYEEV GYP+V+ L VT IRRS++ FV+ TS G +++A K++++ GLRE P+I + Sbjct: 61 IAYEEVLGYPTVKHLEIAVTDIRRSEDGFVIYTSAGEEVQAGKIILSGGLREQLPEIKDI 120 Query: 121 HECYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNG-HAVLDV 179 + YG SLF CP+CDGWELRDQ L+++S+ FH KLL WS+D ++CTNG A LD Sbjct: 121 KDYYGKSLFACPFCDGWELRDQALVIISDQPHAFHKVKLLQNWSRDCIVCTNGTAAALDA 180 Query: 180 EQKQLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSL 239 EQ++ L +R I V++ ++ G G L +V F DGT IER+GGF+ P P F+ +L Sbjct: 181 EQREQLAARGITVIDTPISSLSGQNGMLERVYFTDGTSIERSGGFIDPAQIPNLDFREAL 240 Query: 240 GYEVNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEED 299 GYE ++ G I+ TNE GK+T GVYAAGD AYVMPSQLIYAAA GSKAA+ + +L EE+ Sbjct: 241 GYETSDTGAIM-TNEMGKTTAEGVYAAGDTAYVMPSQLIYAAASGSKAAMAVMADLTEEN 299 Query: 300 F 300 + Sbjct: 300 W 300 >B1D9J6.1 B1D9J6_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 302 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 161/300 (53%), Positives = 210/300 (70%), Gaps = 3/300 (1%) Query: 3 YDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIA 62 YDCAIIGGGPAGLNAALVLGRARR V LFD+++PRNAVT SHGFITRDGV P EFRR A Sbjct: 4 YDCAIIGGGPAGLNAALVLGRARRHVVLFDDNKPRNAVTRESHGFITRDGVKPDEFRRAA 63 Query: 63 YEEVQGYPSVELLPWE-VTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLH 121 + ++ YPSV+++ + V ++R F+V STG +AR +++ GL+E PDI G+ Sbjct: 64 HLDISKYPSVQVVRNKAVDMVKRGHALFLVKASTGEVYQARTIILALGLKEKLPDITGVA 123 Query: 122 ECYGTSLFNCPYCDGWELRDQPLIVVSEN-SGVFHMAKLLYTWSKDLVICTNGHAVLDVE 180 + YG+SLF+CPYCDGWELRDQPL V+SEN S F MA +Y WSKDL++CTNG + + Sbjct: 124 DYYGSSLFSCPYCDGWELRDQPLAVISENESHRFSMASTVYNWSKDLIVCTNGVGTFEPQ 183 Query: 181 QKQLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLG 240 Q+ L SR + + EQ + G G+L+++ FADGT + RTGGFVT +W LG Sbjct: 184 QRAKLMSRGVRIFEQPIASLRGKSGRLQKIVFADGTEVARTGGFVTSDWYLPIRIAEKLG 243 Query: 241 YEVNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEEDF 300 +NE GG+ +++GK+T+ VY AGDAA + P+QLI AAA GSKAA+ +N L DF Sbjct: 244 CRLNESGGL-AIDDYGKTTVEHVYTAGDAATISPAQLIVAAAGGSKAAMSVNTALTHLDF 302 >Q2B7T5.1 Q2B7T5_9BACI Thioredoxin reductase Length = 303 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 155/298 (52%), Positives = 203/298 (68%), Gaps = 3/298 (1%) Query: 4 DCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIAY 63 DCA+IGGGPAGLNAALVLGR+RR LFD+++PRNAVT SHGFITR+G+ P EF++IA Sbjct: 4 DCAVIGGGPAGLNAALVLGRSRRKTILFDDNKPRNAVTSKSHGFITRNGIHPQEFKKIAQ 63 Query: 64 EEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLHEC 123 E+ YP+V L P V I + +N F + T A+K+++ TG +E+ PDIP E Sbjct: 64 GELSKYPNVRLEPQRVHRINKENNLFQIETENAEVYSAKKIIIATGFKEILPDIPKAKEF 123 Query: 124 YGTSLFNCPYCDGWELRDQPLIVVS-ENSGVFHMAKLLYTWSKDLVICTNGHAVLDVEQK 182 YG SLF CPYCDGWELRD+PL V++ E FHMAK++ W+ DL+I TNG VL +E+K Sbjct: 124 YGKSLFGCPYCDGWELRDRPLAVIAEEQQTAFHMAKVVSNWTNDLIIFTNGRKVLSLEEK 183 Query: 183 QLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLGYE 242 LLK+ I + E+ ++ IG EG L +++ DGT + R GGF+ EWK ASF SLGY Sbjct: 184 ALLKNNGIGINEKKISSLIGKEGLLEKIQLEDGTSVLREGGFIASEWKQAASFD-SLGYT 242 Query: 243 VNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEEDF 300 +NE GGI TT+ W ++ G+YA GD SQLI AAA+GS AA+ +N L EE + Sbjct: 243 LNEQGGI-TTDSWQRTNTEGLYACGDTRIAGASQLIIAAAEGSMAAIAVNAALIEEKY 299 >Q5WIH0.1 Q5WIH0_BACSK Thioredoxin reductase Length = 298 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 149/298 (50%), Positives = 205/298 (68%), Gaps = 1/298 (0%) Query: 3 YDCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIA 62 +DC IIGGGPAGLNAALVLGRA+R V L D ++PRNAVTHASHGF+TRDG+ P+ F+ A Sbjct: 2 FDCIIIGGGPAGLNAALVLGRAKRKVLLLDENKPRNAVTHASHGFLTRDGIEPSAFKEAA 61 Query: 63 YEEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLHE 122 Y +++ YP++E V + + + F V T ARK+L+ TGL++ PDI G+ Sbjct: 62 YADLRKYPNIEWTQVRVGAMTKEQSGFSVQTEKKETYHARKILLATGLKDHLPDIAGIES 121 Query: 123 CYGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVEQK 182 YG+SLF CP+CDGWELRD+PL+V+ E+ V H KL++ WSKDLVICTNG L EQK Sbjct: 122 FYGSSLFPCPFCDGWELRDRPLVVICEDERVLHSGKLIWNWSKDLVICTNGQRFLTDEQK 181 Query: 183 QLLKSRNIDVVEQAVTMFIGHEGKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLGYE 242 + + I+++E+ +T G +G+L+ + FADG I R GGFV + + A+F +LG Sbjct: 182 KPFLANGIEIIEEEITALEGEDGQLQNIRFADGQEINRKGGFVAVDLQQAAAFGKALGCT 241 Query: 243 VNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEEDF 300 NE GGI T+ +G++++ GVYA+GD + P QLI AAA+GSK GI ++L EE+F Sbjct: 242 YNEQGGI-KTDPFGRTSVAGVYASGDTTFNGPQQLILAAAEGSKVGAGIVIDLVEEEF 298 >B4AI26.1 B4AI26_BACPU Thioredoxin-disulfide reductase Length = 304 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 207/298 (69%), Gaps = 4/298 (1%) Query: 4 DCAIIGGGPAGLNAALVLGRARRSVALFDNSQPRNAVTHASHGFITRDGVTPAEFRRIAY 63 DCAIIGGGPAGL+AALV+GR R+ V +FD+ PRN VT SHGFIT DG+TP E R+ Sbjct: 4 DCAIIGGGPAGLSAALVVGRGRKQVIVFDDELPRNRVTQESHGFITNDGMTPFEIRQAGE 63 Query: 64 EEVQGYPSVELLPWEVTGIRRSDNRFVVVTSTGRQIEARKLLVTTGLREVFPDIPGLHEC 123 ++Q YP +++ + I+ +D+ F ++T G + EA+K+++ TGL+++ P++ G+HE Sbjct: 64 ADLQNYPHIQIKRSRIVEIQNNDDNFTLLTHEGERFEAKKIILATGLKDILPEMKGMHEV 123 Query: 124 YGTSLFNCPYCDGWELRDQPLIVVSENSGVFHMAKLLYTWSKDLVICTNGHAVLDVEQKQ 183 YG +LF+CP+CDGWEL+D+PL +++ENS FHMAKLL W+KDL++ TNG V E+K Sbjct: 124 YGKTLFSCPFCDGWELKDKPLALIAENSRAFHMAKLLSNWTKDLIVFTNGKQVFAEEEKA 183 Query: 184 LLKSRNIDVVEQAVTMFIGHE-GKLRQVEFADGTRIERTGGFVTPEWKPKASFKGSLGYE 242 LL + +I V++ + M I HE G++ + A+G + R GGFV E+K A F LG + Sbjct: 184 LLSAHSIQVIDVPI-MSIHHENGQMHSLHLANGETVNREGGFVASEFKQSAPFAEKLGCQ 242 Query: 243 VNEFGGIVTTNEWGKSTIPGVYAAGDAAYVMPSQLIYAAADGSKAAVGINMELAEEDF 300 + + GGI T+ G++T+ GV+A+GD P+QL+ AAA GS+A +G+ EL +E+F Sbjct: 243 MTKNGGI-ETDILGRTTVSGVFASGD-NLGGPAQLVLAAAAGSQAGMGVIHELVQEEF 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,856,837,326 Number of extensions: 77562325 Number of successful extensions: 236156 Number of sequences better than 1.0e-05: 1757 Number of HSP's gapped: 233553 Number of HSP's successfully gapped: 1759 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)