BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0020.p (491 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1TF16.1 C1TF16_9FIRM C-terminal processing peptidase 234 1e-59 C0ZBA1.1 C0ZBA1_BREBN Putative carboxyl-terminal processing prot... 229 7e-58 A4J4X5.1 A4J4X5_DESRM Carboxyl-terminal protease EC=3.4.21.102 218 8e-55 B9DWW1.1 B9DWW1_CLOK1 Putative uncharacterized protein 214 1e-53 A5N369.1 A5N369_CLOK5 Predicted protease 214 1e-53 >C1TF16.1 C1TF16_9FIRM C-terminal processing peptidase Length = 482 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/411 (34%), Positives = 235/411 (57%), Gaps = 33/411 (8%) Query: 45 QAAASTDRINEIMQYLEQYNVEGIDQDTLIRGAIDGMVNTLNDPYSQYFDKDEAAAFSHA 104 + A + EI+QY+ +++ + D LI GAI+GM+N+LNDPYS+Y ++ Sbjct: 18 RTALKVLQFEEILQYVYDEHLDKPEMDALINGAINGMLNSLNDPYSEYLTRENIDDLEQF 77 Query: 105 VDLEYVGIGIRMVYTAKELYIEEVVAGSPAEQAGLKRGDTILKINGVKIQDTKGDELS-- 162 ++ ++VGIGI + + +YI++V+ SPA +AG+K+ D IL+++G +D G ++ Sbjct: 78 LNGDFVGIGIILDFKDDLVYIKDVIDDSPAFKAGIKKDDIILEVDG---EDITGLPIADV 134 Query: 163 -----GTAGTKVSLLVSRKGVLKTFSVKRSEMASTSVTSKMLGQNIAYISIGGFTQNADE 217 G G++V+L + R+ +++R + +V K+L N Y+++ F + Sbjct: 135 IRLTRGPKGSEVALELLRENKRINLTIQRVLINLPTVEYKILQGNTGYVALESFGSETAK 194 Query: 218 EFTAALDKMRAGGMKSLVLDLRDNTGGYMDSAYNIASQFMDKG-IMMYTSDQSGALTPVT 276 EF+ A++ ++A GM+SL+LDLR+NTGG +D+A +I+ F++KG ++ D++G V Sbjct: 195 EFSIAINSLKASGMQSLILDLRENTGGRLDAAADISGHFIEKGKPIVKMVDRNGKEDTVL 254 Query: 277 ITNGSKI-GVPVVVLTNEYTASASEALTGALHDNKLATVVGTRSFGKARIQSLIPVSDGA 335 +++ +PVV+LT+E TASASE L GAL D K+A ++G R+FGK +Q LIP+ G Sbjct: 255 SDGKAELKDIPVVILTDELTASASEVLAGALQDYKIAVLLGDRTFGKGVVQDLIPLETGG 314 Query: 336 ELKLTTQKYLTPSKEDFNHIGLSPDIEVQGKTAQLITALQI------------AGMNRIT 383 LKLT KYLTPS D N IG+ PD V + + A Q+ G ++++ Sbjct: 315 ALKLTISKYLTPSGNDLNLIGIKPDRSVLTSSLLIPLARQLLNPPNSRYVEFNLGEHKVS 374 Query: 384 ASGDNHILDVNGSPFAGNVGLIKQGNTIYASSRVLAALLESEVSWDAKNKK 434 +G+ +++ PF N + +Y R L EVSW ++N K Sbjct: 375 VNGE--VIENPAVPFISN-------SEVYVPLRFALEALFYEVSWYSENSK 416 >C0ZBA1.1 C0ZBA1_BREBN Putative carboxyl-terminal processing protease EC=3.4.21.102 Length = 498 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 146/397 (36%), Positives = 219/397 (55%), Gaps = 21/397 (5%) Query: 43 QAQAAASTDRINEI-MQYLEQYNVEGIDQDTLIRGAIDGMVNTLNDPYSQYFDKDEAAAF 101 Q + + D +E+ ++ +E G D T+ AIDGM++TL+DP+S +F +DE F Sbjct: 70 QFKVSEEDDTWDELELRLVEWQKKGGFDTPTMNTWAIDGMLSTLDDPHSVFFTQDELRLF 129 Query: 102 SHAVDLEYVGIGIRMVYTAKELYIEEVVAGSPAEQAGLKRGDTILKINGVKIQDTKGDE- 160 V+ ++VG G R+ + I E+V SPA + L+RGD ++K+N + +E Sbjct: 130 QSDVENQFVGFGFRLRRQNDHIIIREIVPNSPAAASPLQRGDQLIKVNETSLVGKSFEEA 189 Query: 161 ---LSGTAGTKVSLLVSRKGVLKTFSVK--RSEMASTSVTSKMLGQN-IAYISIGGF--- 211 L G GT+ L V R + +K R+ M +M + + YIS+ F Sbjct: 190 YAYLRGNEGTEAVLTVYRPSDKREHQIKLKRASMTLPEAEGQMFSKGAVGYISLETFGSE 249 Query: 212 --TQNADEEFTAALDKMRAGGMKSLVLDLRDNTGGYMDSAYNIASQFMDKGIMMYTSDQS 269 Q D+ A L +++ + LVLDLRDN GGY+ +A +IAS FM++G++MYT++++ Sbjct: 250 GAIQVRDK--LAELSRVQKP-LSGLVLDLRDNGGGYLSTARDIASLFMEEGLLMYTTNRN 306 Query: 270 GALTPVTITNGSKIGVPVVVLTNEYTASASEALTGALHDNKLATVVGTRSFGKARIQSLI 329 G + NG IG+PV +L N TASASE L+GAL D+ +A +VGT++FGK Q +I Sbjct: 307 GVEVETWVRNGQDIGIPVRILVNGGTASASELLSGALRDHGIAKLVGTKTFGKGSAQQVI 366 Query: 330 PVSDGAELKLTTQKYLTPSKEDFNHIGLSPDIEVQGKTAQLITALQIAGMNRITASGDNH 389 P+SDG LKLT +Y TP NH+GL PD+ V+ AQ++ AL +N S Sbjct: 367 PLSDGDALKLTLNEYFTPKHTVVNHVGLQPDMVVEDYGAQVVEALHSLNVNTWELSDAEG 426 Query: 390 ILDVNGSPFAGNVGLIK---QGNTIYASSRVLAALLE 423 +NG PF L K QG I A+ VL+ LL+ Sbjct: 427 DTVINGIPFPTVDPLFKQTPQGLQIRAA--VLSHLLD 461 >A4J4X5.1 A4J4X5_DESRM Carboxyl-terminal protease EC=3.4.21.102 Length = 484 Score = 218 bits (556), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 140/408 (34%), Positives = 218/408 (53%), Gaps = 18/408 (4%) Query: 42 DQAQAAASTDRINEIMQYLEQYNVEGIDQDTLIRGAIDGMVNTLNDPYSQYFDKDEAAAF 101 D+A A+T + E+ Y+ ++++ D L +IDGM++ L DPY+ YF E F Sbjct: 25 DEAMNGAAT--LGEVFGYISKFHLSSPDVKELTNASIDGMLDHLGDPYTVYFAPGEFDQF 82 Query: 102 SHAVDLEYVGIGIRMVYTAKELYIEEVVAGSPAEQAGLKRGDTILKINGVKIQDTKGDEL 161 S ++ ++ GIG + + + V+ SPA+QA L+ GD ILK++ QD G L Sbjct: 83 SDELNGDFEGIGAELESQDQYPRVVRVLPESPAKQADLRVGDIILKVDS---QDIAGKPL 139 Query: 162 S-------GTAGTKVSLLVSRKGVLKT-FSVKRSEMASTSVTSKMLGQNIAYISIGGFTQ 213 + G GTKV L V R G + R+ + +V S++L Q I YISI F Sbjct: 140 TDVVSMLRGKKGTKVYLTVRRAGQKDVQLGITRNIVNMPTVYSEVLNQKIGYISIDSFGM 199 Query: 214 NADEEFTAALDKMRAGGMKSLVLDLRDNTGGYMDSAYNIASQFMDKGIMMYTSDQSGALT 273 EF A +++ G+ SL++DLR+N GGY+DS+ IAS + K ++ ++ Sbjct: 200 ETGTEFGDAFLQLKEKGIDSLIIDLRNNGGGYVDSSAEIASFLLGKDKTIFVTEDRNKRR 259 Query: 274 PVTITNGSKIG--VPVVVLTNEYTASASEALTGALHDNKLATVVGTRSFGKARIQSLIPV 331 +T +I +P+VVL NE TASASE L GAL D +AT++GT+S+GK +Q +IP+ Sbjct: 260 DAYVTEYEEIANKIPMVVLVNEQTASASEILAGALQDYGMATLLGTKSYGKGTVQDIIPL 319 Query: 332 SDGAELKLTTQKYLTPSKEDFNHIGLSPDIEVQGKTAQLITALQIAGMNRITASGDNHIL 391 +G LK+TT +YLT + N IGL PD V QL A Q+ +++ + Sbjct: 320 GNGGALKMTTAEYLTAKERKINGIGLKPDRFVATPALQLYRATQLLHPSKLEMQYTENKA 379 Query: 392 DVNGSPFAGNV-GLIKQGNTIYASSRVLAALLESEVSWDAKNKKVLVT 438 +NG F N+ ++K G + R L E +WD +N +++V+ Sbjct: 380 LINGKKF--NLPAIVKVGGEWFVPLRATVEALGFEANWDKQNNRIVVS 425 >B9DWW1.1 B9DWW1_CLOK1 Putative uncharacterized protein Length = 391 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%) Query: 43 QAQAAASTDRINEIMQYLEQYNVEGIDQDTLIRGAIDGMVNTLNDPYSQYFDKDEAAAFS 102 Q A +++ E+ L +Y ID L+ GAI GM +LNDPY+ + +K E +FS Sbjct: 34 QGNAVGKFEKLFEVRNQLYKYYYGSIDDSVLVEGAIKGMTESLNDPYTVFMNKKEFESFS 93 Query: 103 HAVDLEYVGIGIRMVYTAKELYIEEVVAGSPAEQAGLKRGDTILKINGVKIQDTKGDE-- 160 + Y GIGI+++ + + +V SPA+Q G+ GD I K++G + D+ Sbjct: 94 AQTEGNYYGIGIQVMTKENNIVVVDVFDNSPAKQQGITSGDIIQKVDGTTVTGKNLDKAV 153 Query: 161 --LSGTAGTKVSLLVSR--KGVLKTFSVKRSEMASTSVTSKMLGQNIAYISIGGFTQNAD 216 + G T+V+L + R KG VKR ++ +V +ML N+AYI I F +N Sbjct: 154 SLIKGKENTEVTLALYRESKGSFDV-KVKRKKIDINTVKGEMLKDNVAYIQIDMFDENTA 212 Query: 217 EEFTAALDKMRAGGMKSLVLDLRDNTGGYMDSAYNIASQFMDKG-IMMYTSDQSGALTPV 275 E F L K+ + GMKSL++DLRD+ GG +D ++ S F+ K +++ T D+ Sbjct: 213 ESFKNELKKLSSQGMKSLIVDLRDDPGGMLDQCVDMVSNFVPKDKVIVSTIDKYKNKKEY 272 Query: 276 TITNGSKIGVPVVVLTNEYTASASEALTGALHDNKLATVVGTRSFGKARIQSLIPVSDGA 335 G +PV +LTNE TASASE +GAL D KLAT+VG +++GK +Q+++ D Sbjct: 273 KSKGGDFNNLPVTILTNENTASASEIFSGALKDYKLATIVGKKTYGKGVVQTILDTGDST 332 Query: 336 ELKLTTQKYLTPSKEDFNHIGLSPDIEVQ 364 LK+T KY TPS D N G++PD+EV+ Sbjct: 333 ALKVTISKYYTPSGSDINKKGINPDVEVE 361 >A5N369.1 A5N369_CLOK5 Predicted protease Length = 391 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 185/329 (56%), Gaps = 8/329 (2%) Query: 43 QAQAAASTDRINEIMQYLEQYNVEGIDQDTLIRGAIDGMVNTLNDPYSQYFDKDEAAAFS 102 Q A +++ E+ L +Y ID L+ GAI GM +LNDPY+ + +K E +FS Sbjct: 34 QGNAVGKFEKLFEVRNQLYKYYYGSIDDSVLVEGAIKGMTESLNDPYTVFMNKKEFESFS 93 Query: 103 HAVDLEYVGIGIRMVYTAKELYIEEVVAGSPAEQAGLKRGDTILKINGVKIQDTKGDE-- 160 + Y GIGI+++ + + +V SPA+Q G+ GD I K++G + D+ Sbjct: 94 AQTEGNYYGIGIQVMTKENNIVVVDVFDNSPAKQQGITSGDIIQKVDGTTVTGKNLDKAV 153 Query: 161 --LSGTAGTKVSLLVSR--KGVLKTFSVKRSEMASTSVTSKMLGQNIAYISIGGFTQNAD 216 + G T+V+L + R KG VKR ++ +V +ML N+AYI I F +N Sbjct: 154 SLIKGKENTEVTLALYRESKGSFDV-KVKRKKIDINTVKGEMLKDNVAYIQIDMFDENTA 212 Query: 217 EEFTAALDKMRAGGMKSLVLDLRDNTGGYMDSAYNIASQFMDKG-IMMYTSDQSGALTPV 275 E F L K+ + GMKSL++DLRD+ GG +D ++ S F+ K +++ T D+ Sbjct: 213 ESFKNELKKLSSQGMKSLIVDLRDDPGGMLDQCVDMVSNFVPKDKVIVSTIDKYKNKKEY 272 Query: 276 TITNGSKIGVPVVVLTNEYTASASEALTGALHDNKLATVVGTRSFGKARIQSLIPVSDGA 335 G +PV +LTNE TASASE +GAL D KLAT+VG +++GK +Q+++ D Sbjct: 273 KSKGGDFNNLPVTILTNENTASASEIFSGALKDYKLATIVGKKTYGKGVVQTILDTGDST 332 Query: 336 ELKLTTQKYLTPSKEDFNHIGLSPDIEVQ 364 LK+T KY TPS D N G++PD+EV+ Sbjct: 333 ALKVTISKYYTPSGSDINKKGINPDVEVE 361 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,582,524,614 Number of extensions: 105596302 Number of successful extensions: 244874 Number of sequences better than 1.0e-05: 1867 Number of HSP's gapped: 240737 Number of HSP's successfully gapped: 1880 Length of query: 491 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 351 Effective length of database: 1,741,754,103 Effective search space: 611355690153 Effective search space used: 611355690153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)