BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0019.p (385 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4J3.1 B3K4J3_9BACI Copper amine oxidase domain protein 117 1e-24 B3KA42.1 B3KA42_9BACI Copper amine oxidase domain protein 96 6e-18 A3DEW1.1 A3DEW1_CLOTH Copper amine oxidase-like protein 93 5e-17 B4BE52.1 B4BE52_CLOTM Copper amine oxidase domain protein 93 5e-17 A3DKE2.1 A3DKE2_CLOTH Copper amine oxidase-like protein 92 6e-17 >B3K4J3.1 B3K4J3_9BACI Copper amine oxidase domain protein Length = 386 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 16/361 (4%) Query: 21 IKVYINGSNVAFTAGSPYLKNNTVLVPFRVIFEKLGLNVLWDAKTGTVTGTSASLTISLK 80 I+VY++ + F A +P +KN V FR +F+ L V W+ VTGT + + Sbjct: 31 IRVYLDNQEIQF-AAAPIMKNGVTFVQFRPLFQALDYKVHWNGANKQVTGTYLDQKLQMT 89 Query: 81 IGSSRATVNNLVKKLATAPSSISGTTYIPLRFVAEATGGTAVWDAASRSVKINTPEASDN 140 IG A VN L AP + G T +PLRFVAEATG WD+ +R+VKI+ A+ Sbjct: 90 IGQKTAYVNGAKTTLQIAPFTQGGNTLVPLRFVAEATGLPVKWDSKARTVKIDREGATAK 149 Query: 141 SEQQITDLMHLSNKYFNAENAAGYYSLVVFNS-VPADSVDNLKEYFKRYDMVTTIESLDI 199 +E ++ L H+ + +A+ S+ S V A+ N ++ FK D + + D+ Sbjct: 150 AEDEVKKLYHIIEEAGSAKKLDEVMSVFHPESPVLAEVKQNYQDQFKN-DKHVSADVWDV 208 Query: 200 LSIQGNEAVVHTVEKSVRKGGDYLPDERYEYLHTLVRKN--GVWKIESSELQDSSVLLTP 257 ++ G +T R GG + D Y L++K+ G WKI L ++ L Sbjct: 209 -AVAGTSIHAYTSVSLDRIGGPFAWDVTLHY-ENLLKKDASGAWKIYDLNLYETEYFLGD 266 Query: 258 EQGKTAVVLPQSDASAIKDSLSKYYAARNAKN---VDNTLAQLTYYGEEYEASMKDAIAE 314 + + V+P+++ AI +S+ Y N +N + + + + + E ++ S+++ I Sbjct: 267 KLLEARPVVPEAELKAILESIDIQYKGFNEENGPLLMSVIHPDSVFHEMFQTSIEEGI-- 324 Query: 315 YFEAYNLTETLNSSNIFYYTPDEAAIYVEAAVKDADSGESYTQXXXXXXXXXXXGQWTID 374 F+ N ++ ++A +Y E + DAD Y+ G+W I Sbjct: 325 -FDEVNFNLKSEELRTVFFQGEDAVVYAEES-DDADGETIYS--TSLYWLKKTEGKWLIY 380 Query: 375 D 375 D Sbjct: 381 D 381 >B3KA42.1 B3KA42_9BACI Copper amine oxidase domain protein Length = 493 Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Query: 17 ADKPIKVYINGSNVAFTAGSPYLKNNTVLVPFRVIFEKLGLNVLWDAKTGTVTGTSASLT 76 + PI++ ING ++ A SP + +VLVP R IFE L +V WD KT +V+ + S Sbjct: 376 GEAPIRIKINGQLQSY-AQSPVMVGGSVLVPMRPIFESLDASVKWDQKTQSVSSSKGSTQ 434 Query: 77 ISLKIGSSRATVNNLVKKLATAPSSISGTTYIPLRFVAEATGGTAVWDAASRSVKINT 134 I LK+GS +A VN L +AP + GTT +PLRFVA A G WD + V I T Sbjct: 435 IKLKMGSKQAVVNGKTVTLDSAPRMVKGTTMVPLRFVASALGCEVKWDGNEKMVLITT 492 >A3DEW1.1 A3DEW1_CLOTH Copper amine oxidase-like protein Length = 259 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 14 AFAADKPIKVYINGSNVAFTAGSPYLKNNTVLVPFRVIFEKLGLNVLWDAKTGTVTGTSA 73 ++A+ IKV++NG + F +PY+KN +VPFR IFE LG+++ W+ T+ T+ Sbjct: 33 SYASADEIKVFLNGVEIKFDV-APYIKNGRTMVPFRAIFEALGVDISWNGVNRTILATND 91 Query: 74 SLTISLKIGSSRATVNNLVKKLATAPSSISGTTYIPLRFVAEATGGTAVWDAASRSVKI 132 + I ++IG + A VN L + G T++PLRFV+E G WD A R+V I Sbjct: 92 TTEIYIEIGKAFAYVNGYKVNLDAEAEIVGGRTFVPLRFVSENAGADVSWDGARRTVYI 150 >B4BE52.1 B4BE52_CLOTM Copper amine oxidase domain protein Length = 259 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 14 AFAADKPIKVYINGSNVAFTAGSPYLKNNTVLVPFRVIFEKLGLNVLWDAKTGTVTGTSA 73 ++A+ IKV++NG + F +PY+KN +VPFR IFE LG+++ W+ T+ T+ Sbjct: 33 SYASADEIKVFLNGVEIKFDV-APYIKNGRTMVPFRAIFEALGVDISWNGVNRTILATND 91 Query: 74 SLTISLKIGSSRATVNNLVKKLATAPSSISGTTYIPLRFVAEATGGTAVWDAASRSVKI 132 + I ++IG + A VN L + G T++PLRFV+E G WD A R+V I Sbjct: 92 TTEIYIEIGKAFAYVNGYKVNLDAEAEIVGGRTFVPLRFVSENAGADVSWDGARRTVYI 150 >A3DKE2.1 A3DKE2_CLOTH Copper amine oxidase-like protein Length = 262 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 3 ISLLALMLAVPAFAADKPIKVYINGSNVAFTAGSPYLKNN-TVLVPFRVIFEKLGLNVLW 61 +S+ ++L+V A + P++V +NG V F P++ +N VP R I EKLG NV W Sbjct: 11 VSVFIMLLSVATAAIELPLRVEVNGERVYFPDEQPFIDSNGRTQVPARFIAEKLGANVTW 70 Query: 62 DAKTGTVTGTSASLTISLKIGSSRATVNNLVKKLATAPSSISGTTYIPLRFVAEATGGTA 121 D K S + L IG + +N KK+ TA ISG T++P R+VAEA T Sbjct: 71 DGKEKKAVFEKGSKKLVLYIGKAEYELNGEQKKMDTAALLISGRTFVPARYVAEAFDATV 130 Query: 122 VWDAASRSVKINT 134 WD R+V INT Sbjct: 131 SWDPDIRTVYINT 143 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.127 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,101,300,302 Number of extensions: 81537699 Number of successful extensions: 218817 Number of sequences better than 1.0e-05: 203 Number of HSP's gapped: 218565 Number of HSP's successfully gapped: 203 Length of query: 385 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 248 Effective length of database: 1,770,017,148 Effective search space: 438964252704 Effective search space used: 438964252704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)