BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0013.p
         (76 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKQ8.1 B3KKQ8_9BACI Putative uncharacterized protein                113   4e-24
B1DFD8.1 B1DFD8_9BACL Putative uncharacterized protein                103   5e-21
Q5WDU1.1 Q5WDU1_BACSK Putative uncharacterized protein                 78   3e-13
A8W0K5.1 A8W0K5_9BACI Phospho-N-acetylmuramoyl-pentapeptide-tran...    77   5e-13
Q9K7E9.1 Q9K7E9_BACHD BH3413 protein                                   77   6e-13

>B3KKQ8.1 B3KKQ8_9BACI Putative uncharacterized protein
          Length = 76

 Score =  113 bits (283), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query: 1  MIPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLT 60
          MIPFS+TWPYD++  D+YV  CPFC  +NV+LPMKPKEL +VREGKKKLL+FPCC   +T
Sbjct: 1  MIPFSNTWPYDVVGNDVYVHSCPFCGTDNVLLPMKPKELVSVREGKKKLLIFPCCHNKVT 60

Query: 61 VIDTDADYLLFDRAVR 76
          V+D+D DYLL D+ +R
Sbjct: 61 VLDSDIDYLLTDQRLR 76


>B1DFD8.1 B1DFD8_9BACL Putative uncharacterized protein
          Length = 80

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 61/76 (80%)

Query: 1  MIPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLT 60
          MIPF  TWPYDI+++D+YV  CPFC  ENV++P++ +E+++++ GKKKLLVFPCC   +T
Sbjct: 1  MIPFERTWPYDIVMKDVYVPSCPFCSSENVLIPLRVREIEDIQHGKKKLLVFPCCHNKVT 60

Query: 61 VIDTDADYLLFDRAVR 76
          V+D D DY+L D+ +R
Sbjct: 61 VLDMDQDYMLTDQRLR 76


>Q5WDU1.1 Q5WDU1_BACSK Putative uncharacterized protein
          Length = 79

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 48/76 (63%)

Query: 1  MIPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLT 60
           +PFSHTWPY+   +D Y++ CP+C  E+V+ P+K K++   +E  K  LV PCC   +T
Sbjct: 3  FLPFSHTWPYEQQGKDFYIETCPYCQTEHVLTPLKEKDVAQAKESFKVRLVMPCCHKVMT 62

Query: 61 VIDTDADYLLFDRAVR 76
          +++ D DY   D  +R
Sbjct: 63 IVEADDDYFWADEPLR 78


>A8W0K5.1 A8W0K5_9BACI Phospho-N-acetylmuramoyl-pentapeptide-transferase
          Length = 79

 Score = 77.0 bits (188), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query: 2  IPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLTV 61
          IPFSHTWPY+I+  D+YV  CPFC + NV+LP   ++L+  +E  K     PCC  ++T 
Sbjct: 5  IPFSHTWPYEIMAGDMYVNECPFCSEANVLLPDGMRKLKRAKESIKTQFHMPCCFGTITA 64

Query: 62 IDTDADYLLFDRAVR 76
          ++ D DYL     +R
Sbjct: 65 LEADDDYLWAMEPLR 79


>Q9K7E9.1 Q9K7E9_BACHD BH3413 protein
          Length = 79

 Score = 76.6 bits (187), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 50/76 (65%)

Query: 1  MIPFSHTWPYDILLEDLYVQYCPFCDKENVILPMKPKELQNVREGKKKLLVFPCCKTSLT 60
          +IPF +TWPY+ +  D+Y   CPFC + +V+  M P+ L+  +EG K  +  PCC+  LT
Sbjct: 3  VIPFENTWPYERMSGDIYFDECPFCGERHVLTSMSPEALELAKEGVKVSINLPCCRGRLT 62

Query: 61 VIDTDADYLLFDRAVR 76
          V++ D DYL  ++A+R
Sbjct: 63 VLEADDDYLWTNQALR 78


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.144    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 454,601,913
Number of extensions: 15457720
Number of successful extensions: 43202
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 43202
Number of HSP's successfully gapped: 5
Length of query: 76
Length of database: 3,060,696,203
Length adjustment: 47
Effective length of query: 29
Effective length of database: 2,617,908,498
Effective search space: 75919346442
Effective search space used: 75919346442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 125 (52.8 bits)