BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0012.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKQ7.1 B3KKQ7_9BACI Putative uncharacterized protein                 80   7e-14
B1DFD9.1 B1DFD9_9BACL Putative uncharacterized protein                 75   2e-12
B9IXG4.1 B9IXG4_BACCQ Putative uncharacterized protein                 70   7e-11
B7HNT3.1 B7HNT3_BACC7 Putative uncharacterized protein                 70   7e-11
C3H613.1 C3H613_BACTU Putative uncharacterized protein                 70   7e-11

>B3KKQ7.1 B3KKQ7_9BACI Putative uncharacterized protein
          Length = 61

 Score = 80.1 bits (196), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 48/59 (81%), Gaps = 3/59 (5%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQDTT---DSSSAAE 56
          M+PLQISPETAVTL+KQLGVPLE LMHMPQHIL+QKIAEL+K +    T   D S ++E
Sbjct: 1  MRPLQISPETAVTLSKQLGVPLEQLMHMPQHILMQKIAELAKNEEAKATPKDDESHSSE 59


>B1DFD9.1 B1DFD9_9BACL Putative uncharacterized protein
          Length = 63

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 45/53 (84%)

Query: 2  KPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQDTTDSSSA 54
          +PLQISPETA+ L+KQLGVPLEHLMHMP+HILLQK+ EL+K +++    S SA
Sbjct: 3  QPLQISPETAIKLSKQLGVPLEHLMHMPKHILLQKLTELAKAEAEAGKPSESA 55


>B9IXG4.1 B9IXG4_BACCQ Putative uncharacterized protein
          Length = 48

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 42/47 (89%), Gaps = 1/47 (2%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQD 47
          MKPLQISP+TAV L+K LGVPLE LMHMPQHIL+QK+ EL +KQ++D
Sbjct: 1  MKPLQISPDTAVRLSKALGVPLEQLMHMPQHILIQKLVEL-EKQNKD 46


>B7HNT3.1 B7HNT3_BACC7 Putative uncharacterized protein
          Length = 48

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 42/47 (89%), Gaps = 1/47 (2%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQD 47
          MKPLQISP+TAV L+K LGVPLE LMHMPQHIL+QK+ EL +KQ++D
Sbjct: 1  MKPLQISPDTAVRLSKALGVPLEQLMHMPQHILIQKLVEL-EKQNKD 46


>C3H613.1 C3H613_BACTU Putative uncharacterized protein
          Length = 48

 Score = 70.1 bits (170), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 42/47 (89%), Gaps = 1/47 (2%)

Query: 1  MKPLQISPETAVTLAKQLGVPLEHLMHMPQHILLQKIAELSKKQSQD 47
          MKPLQISP+TAV L+K LGVPLE LMHMPQHIL+QK+ EL +KQ++D
Sbjct: 1  MKPLQISPDTAVRLSKALGVPLEQLMHMPQHILIQKLVEL-EKQNKD 46


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.121    0.318 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 329,882,766
Number of extensions: 8747748
Number of successful extensions: 24679
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 24679
Number of HSP's successfully gapped: 93
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 126 (53.1 bits)