BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0010.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKQ4.1 B3KKQ4_9BACI Putative uncharacterized protein                213   4e-54
B1DJ55.1 B1DJ55_9BACL Putative uncharacterized protein                127   5e-28

>B3KKQ4.1 B3KKQ4_9BACI Putative uncharacterized protein
          Length = 134

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%)

Query: 1   MLRTEQLSLARQIDLVFKELQEELSGLSSGTVFVQIRNNVIGKFGIRHNPLAGRSGTFAA 60
           M++ +QLSLARQ+D+VFKEL+EEL GLSSGTVFVQIRNNVIGKFGIRHNPL+GR+G  A 
Sbjct: 1   MVKLDQLSLARQLDIVFKELEEELGGLSSGTVFVQIRNNVIGKFGIRHNPLSGRNGIIAP 60

Query: 61  EQEGLNTVQQSSFRLMALESLKYKRRWTHGEISYEFAVRQGMVVVDATLESNYNMANLMI 120
           ++EGL+  QQ SFR MALESLK+KR WTHGEISYEF VRQG+VVVDA LESNYNMANLMI
Sbjct: 61  QEEGLSEAQQFSFRSMALESLKHKRHWTHGEISYEFMVRQGIVVVDAVLESNYNMANLMI 120

Query: 121 RYPRNVQSDKPDQ 133
           RYPRN  ++   +
Sbjct: 121 RYPRNTYAEAASE 133


>B1DJ55.1 B1DJ55_9BACL Putative uncharacterized protein
          Length = 144

 Score =  127 bits (318), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/124 (48%), Positives = 83/124 (66%), Gaps = 3/124 (2%)

Query: 2   LRTEQLSLARQIDLVFKELQEELSGLSSGTVFVQIRNNVIGKFGIRHNPLAGRSGTFAAE 61
           +  + + LARQ+D VF++L+EEL+    GTV + IRNN +GKFG+RHNP+  R+G    E
Sbjct: 1   MNIDAMPLARQVDFVFRQLEEELTNAVGGTVHIHIRNNAVGKFGLRHNPIETRNGNLEQE 60

Query: 62  QE-GLNTVQQSSFRLMALESLKYKRRWTHGEISYEFAVRQGMVVVDATL--ESNYNMANL 118
            E G+   Q  +FR +A+++LK +R WTHGEI Y+FAVRQ      A++  ESNYN AN 
Sbjct: 61  GEGGMTPTQVQAFRKLAIDALKLRRNWTHGEIMYDFAVRQNAGTWSASICYESNYNTANW 120

Query: 119 MIRY 122
             RY
Sbjct: 121 NYRY 124


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 703,385,956
Number of extensions: 23984506
Number of successful extensions: 51573
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 51571
Number of HSP's successfully gapped: 2
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)