BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0009.p
         (78 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKQ3.1 B3KKQ3_9BACI Small acid-soluble spore protein alpha/bet...   124   4e-27
B3KKP9.1 B3KKP9_9BACI Small acid-soluble spore protein alpha/bet...   113   5e-24
B1DJ50.1 B1DJ50_9BACL Small acid-soluble spore protein alpha/bet...   103   4e-21
B3KBR6.1 B3KBR6_9BACI Small acid-soluble spore protein alpha/bet...    94   4e-18
B1D7M0.1 B1D7M0_9BACL Small acid-soluble spore protein alpha/bet...    93   6e-18

>B3KKQ3.1 B3KKQ3_9BACI Small acid-soluble spore protein alpha/beta type
          Length = 73

 Score =  124 bits (310), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 62/64 (96%), Positives = 62/64 (96%)

Query: 14 NNLVVPQATAALQQLKYEAAQELGVTIPADGYYGNYTSRETGSLGGYITKRLVQLAEQQL 73
          NNLVVPQATAALQQLK EAAQELGVTIP DGYYGNYTSRETGSLGGYITKRLVQLAEQQL
Sbjct: 8  NNLVVPQATAALQQLKMEAAQELGVTIPQDGYYGNYTSRETGSLGGYITKRLVQLAEQQL 67

Query: 74 SGRS 77
          SGRS
Sbjct: 68 SGRS 71


>B3KKP9.1 B3KKP9_9BACI Small acid-soluble spore protein alpha/beta type
          Length = 72

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/62 (91%), Positives = 58/62 (93%)

Query: 14 NNLVVPQATAALQQLKYEAAQELGVTIPADGYYGNYTSRETGSLGGYITKRLVQLAEQQL 73
          NNLVVPQATAALQ+LK EAAQELGVTIP DGYYGNYTSRETGSLGGYITKRLVQ AEQ L
Sbjct: 6  NNLVVPQATAALQRLKLEAAQELGVTIPQDGYYGNYTSRETGSLGGYITKRLVQQAEQAL 65

Query: 74 SG 75
          SG
Sbjct: 66 SG 67


>B1DJ50.1 B1DJ50_9BACL Small acid-soluble spore protein alpha/beta type
          Length = 73

 Score =  103 bits (257), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 55/64 (85%)

Query: 14 NNLVVPQATAALQQLKYEAAQELGVTIPADGYYGNYTSRETGSLGGYITKRLVQLAEQQL 73
          N LVVPQA AAL Q+K EAA ELGV IPADGYYGN TSR+ GSLGGYITK+LVQ+AEQQL
Sbjct: 8  NQLVVPQAQAALNQMKMEAASELGVQIPADGYYGNVTSRDAGSLGGYITKKLVQIAEQQL 67

Query: 74 SGRS 77
          SG S
Sbjct: 68 SGGS 71


>B3KBR6.1 B3KBR6_9BACI Small acid-soluble spore protein alpha/beta type
          Length = 75

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 16 LVVPQATAALQQLKYEAAQELGVTIPADGYYGNYTSRETGSLGGYITKRLVQLAEQQLSG 75
          LVVP+A AAL+QLKYE AQELG++IP DGY GN TS E GS+GGYITKRLV LAEQQL+G
Sbjct: 11 LVVPRANAALEQLKYEVAQELGISIPQDGYQGNMTSYENGSIGGYITKRLVTLAEQQLAG 70

Query: 76 R 76
          +
Sbjct: 71 Q 71


>B1D7M0.1 B1D7M0_9BACL Small acid-soluble spore protein alpha/beta type
          Length = 68

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 54/62 (87%)

Query: 15 NLVVPQATAALQQLKYEAAQELGVTIPADGYYGNYTSRETGSLGGYITKRLVQLAEQQLS 74
          +L+VP A AAL+QLK+E AQELG+ +PADGYYGN T+ + GS+GG ITKRL+Q+AEQQ++
Sbjct: 6  SLLVPNARAALEQLKFEIAQELGIELPADGYYGNMTTHDMGSIGGTITKRLIQMAEQQIA 65

Query: 75 GR 76
          GR
Sbjct: 66 GR 67


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 369,133,277
Number of extensions: 11656025
Number of successful extensions: 65742
Number of sequences better than 1.0e-05: 643
Number of HSP's gapped: 65277
Number of HSP's successfully gapped: 643
Length of query: 78
Length of database: 3,060,696,203
Length adjustment: 49
Effective length of query: 29
Effective length of database: 2,599,066,468
Effective search space: 75372927572
Effective search space used: 75372927572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)