BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0008.p (324 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKQ2.1 B3KKQ2_9BACI Aldose 1-epimerase 433 e-120 A7Z5D5.1 A7Z5D5_BACA2 YoxA 176 2e-42 Q70JW9.1 Q70JW9_BACAM YoxA protein 176 2e-42 P39840.2 YOXA_BACSU Uncharacterized protein yoxA 170 2e-40 Q65LW4.1 Q65LW4_BACLD YoxA 145 3e-33 >B3KKQ2.1 B3KKQ2_9BACI Aldose 1-epimerase Length = 329 Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust. Identities = 195/311 (62%), Positives = 250/311 (80%) Query: 1 MKQVTKGQWGGYDTYILHSRELEVTLLPRLGNNVISLWDRKQNREILRKPEESDLSYYLQ 60 M QVTKGQW GYDTYIL+S LEVTLLPRLGNNVI + D + +REILRKP+ES+L++YLQ Sbjct: 1 MNQVTKGQWNGYDTYILNSGRLEVTLLPRLGNNVIGIKDNENSREILRKPDESELAFYLQ 60 Query: 61 KPYHFGMPLLIPPGRIRQGQFQFEGRTYQFEQNTAGGHHIHGLHRTQAWCVSDIEEDEEG 120 KPYHFG+P+LIPPGRI +G F++ G +YQF+QNTA +HIHGLHR+QAWCVSDIEE+++G Sbjct: 61 KPYHFGIPMLIPPGRISKGHFEYGGTSYQFDQNTANDNHIHGLHRSQAWCVSDIEEEDDG 120 Query: 121 CAVTTEFNTADDPRWMEQFPVPLKLEMTFRLQDNRFRQTLKITHQGTARVPFGIGYHTWF 180 CAV+TEF ++DDP+W+ QFPVPLKLEMTFRLQ R Q+L++T+ G + +PFG+GYHTWF Sbjct: 121 CAVSTEFISSDDPKWIAQFPVPLKLEMTFRLQGTRLTQSLRVTNLGASPIPFGMGYHTWF 180 Query: 181 MIDGEPGRWKLQLPAENVYELNDELLTSGNLLPLGELETXXXXXXXXXXXXDTVLRIGDQ 240 ++DGEP RW L LP E +Y LN+EL+ +G+L PLG LE DT+L+I + Sbjct: 181 LLDGEPHRWTLDLPVEGIYTLNNELIPTGDLSPLGHLEQLNSGLNLKDADLDTILKIPEG 240 Query: 241 QPAEAVLARDDGYVLRYSADQEYFRHWVVYTNGTADQYLCIEPYTWLPDGPNLGKDDAFT 300 +PAEA+L RDDGY + YSAD+ +F+HWV+YT G A+Q+LCIEPYTWLP+ PNL + T Sbjct: 241 KPAEALLKRDDGYQIHYSADRAFFKHWVLYTKGVAEQFLCIEPYTWLPNAPNLNLPNEET 300 Query: 301 GIITLEPRQTL 311 G+I LEP QT+ Sbjct: 301 GLIHLEPGQTV 311 >A7Z5D5.1 A7Z5D5_BACA2 YoxA Length = 322 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 161/296 (54%), Gaps = 9/296 (3%) Query: 21 ELEVTLLPRLGNNVISLWDRKQNREILRKPEESDLSYYLQKPYHFGMPLLIPPGRIRQGQ 80 + E ++P G+NVISL D++ +LR+PE ++ + KP +G+P+L PP RI G Sbjct: 20 QAECIIVPEWGSNVISLRDKRTGMRLLREPETAE--QFRAKPMLYGIPVLFPPNRITDGT 77 Query: 81 FQFEGRTYQFEQNTAGGH-HIHGLHRTQAWCVSDIEEDEEGCAVTTEFNTADDPRWMEQF 139 F+F+GR YQFE N H HIHG Q W + +E+ +G V TE + + PR +QF Sbjct: 78 FRFDGRAYQFEINEEDKHNHIHGFLHNQHWKAAAAKEEGDGMTVETEIDLSKIPRVHKQF 137 Query: 140 PVPLKLEMTFRLQDNRFRQTLKITHQGTARVPFGIGYHTWFMIDGEPGRWKLQLPAENVY 199 P + + MT+ L+DN F Q I ++GT P+G+GYH+ F+ + E R +L L A+ ++ Sbjct: 138 PHDVVVRMTYTLKDNVFTQRALIINKGTEAFPWGLGYHSTFVFNEE--RSRLFLTADRMW 195 Query: 200 ELNDELLTSGNLLPLGELETXXXXXXXXXXXXDTVLRIGDQQPA--EAVLAR-DDGYVLR 256 ELN+ + +G LL + + E D V + EAV+ D+ + Sbjct: 196 ELNERFVPTGRLLDVPDKEAFRHGMSLKNKQFDDVFLSSGRNGGNNEAVIYHPDEQLSVL 255 Query: 257 YSADQEYFRHWVVYTNGTADQYLCIEPYTWLPDGPNLGKDDAFTGIITLEPRQTLA 312 Y AD F+HWVVY ++ +EPYT + D NL + + TG+ L+P + A Sbjct: 256 YQADTS-FKHWVVYNGDGKQGFVSLEPYTSVTDAFNLNQPASLTGLQILKPGEEAA 310 >Q70JW9.1 Q70JW9_BACAM YoxA protein Length = 324 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 161/296 (54%), Gaps = 9/296 (3%) Query: 21 ELEVTLLPRLGNNVISLWDRKQNREILRKPEESDLSYYLQKPYHFGMPLLIPPGRIRQGQ 80 + E ++P G+NVISL D++ +LR+PE ++ + KP +G+P+L PP RI G Sbjct: 22 QAECIIVPEWGSNVISLRDKRTGMRLLREPETAE--QFRAKPMLYGIPVLFPPNRITDGT 79 Query: 81 FQFEGRTYQFEQNTAGGH-HIHGLHRTQAWCVSDIEEDEEGCAVTTEFNTADDPRWMEQF 139 F+F+GR YQFE N H HIHG Q W + +E+ +G V TE + + PR +QF Sbjct: 80 FRFDGRAYQFEINEEDKHNHIHGFLHNQHWKAAAAKEEGDGMTVETEIDLSKIPRVHKQF 139 Query: 140 PVPLKLEMTFRLQDNRFRQTLKITHQGTARVPFGIGYHTWFMIDGEPGRWKLQLPAENVY 199 P + + MT+ L+DN F Q I ++GT P+G+GYH+ F+ + E R +L L A+ ++ Sbjct: 140 PHDVVVRMTYTLKDNVFTQRALIINKGTEAFPWGLGYHSTFVFNEE--RSRLFLTADRMW 197 Query: 200 ELNDELLTSGNLLPLGELETXXXXXXXXXXXXDTVLRIGDQQPA--EAVLAR-DDGYVLR 256 ELN+ + +G LL + + E D V + EAV+ D+ + Sbjct: 198 ELNERFVPTGRLLDVPDKEAFRHGMSLKNKQFDDVFLSSGRNGGNNEAVIYHPDEQLSVL 257 Query: 257 YSADQEYFRHWVVYTNGTADQYLCIEPYTWLPDGPNLGKDDAFTGIITLEPRQTLA 312 Y AD F+HWVVY ++ +EPYT + D NL + + TG+ L+P + A Sbjct: 258 YQADTS-FKHWVVYNGDGKQGFVSLEPYTSVTDAFNLNQPASLTGLQILKPGEEAA 312 >P39840.2 YOXA_BACSU Uncharacterized protein yoxA Length = 325 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 10/294 (3%) Query: 19 SRELEVTLLPRLGNNVISLWDRKQNREILRKPEESDLSYYLQKPYHFGMPLLIPPGRIRQ 78 + LE+ ++P G+NVISL D+ N ++LR+PE ++ + P +G+P+L PP RI Sbjct: 20 NEHLEMIVVPEWGSNVISLVDKTTNVQLLREPETAE--SFHDTPTLYGIPILFPPNRISD 77 Query: 79 GQFQFEGRTYQFEQNTAGGH-HIHGLHRTQAWCVSDIEEDEEGCAVTTEFNTADDPRWME 137 G F F GRTY F+ N H H+HG + W V ++ +EG V TE + ++ P + Sbjct: 78 GTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVETEIDLSELPHVQK 137 Query: 138 QFPVPLKLEMTFRLQDNRFRQTLKITHQGTARVPFGIGYHTWFMIDGEPGRWKLQLPAEN 197 QFP + MT+ +++N + + ++G P+GIGYHT F+ E + L A+ Sbjct: 138 QFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAESSLFSLT--ADQ 195 Query: 198 VYELNDELLTSGNLLPLGELETXXXXXXXXXXXXDTVLRIGDQQPA---EAVLARDDGYV 254 +EL++ LL +G L+ + E D V Q+ +AV+ ++ Sbjct: 196 QWELDERLLPTGKLMDVPYKEALHEGMDLRHKQLDDVFLSSYQKRGGENQAVIYHQHAHI 255 Query: 255 -LRYSADQEYFRHWVVYTNGTADQYLCIEPYTWLPDGPNLGKDDAFTGIITLEP 307 + Y AD++ F+HWVVY YLC EPYTW+ + NL + TG+ LEP Sbjct: 256 SIIYKADEQ-FKHWVVYNADGKQGYLCPEPYTWVTNAVNLDLPSSLTGLQVLEP 308 >Q65LW4.1 Q65LW4_BACLD YoxA Length = 326 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 144/300 (48%), Gaps = 15/300 (5%) Query: 21 ELEVTLLPRLGNNVISLWDRKQNREILRKPEESDLSYYLQKPYHFGMPLLIPPGRIRQGQ 80 +LE L+P G+N+ISL + +L+ PE + Y P+ FG+P+L PP RI G+ Sbjct: 22 DLEAVLVPGWGSNLISLRWKAGGLNLLKTPETKE--EYDANPFLFGIPVLFPPNRIDHGR 79 Query: 81 FQFEGRTYQFEQNTAG-GHHIHGLHRTQAWCVSDIEEDEEGCAVTTEFNTADDPRWMEQF 139 F + GRTY+ N +H+HG + W V +E EE V T ++ D P F Sbjct: 80 FTYAGRTYELPINEKPLENHLHGFLYDKKWTVKKMEATEERIIVQTMLDSDDHPGIKSIF 139 Query: 140 PVPLKLEMTFRLQDNRFRQTLKITHQGTARVPFGIGYHTWFMI----DGEPGRWKLQLPA 195 P + +T+ L+ + ++G +P G+GYHT F G+ + LPA Sbjct: 140 PHSFSITITYTLEGQHLKIDASAVNRGQDPMPIGLGYHTSFRYPLNESGDKEKCLFTLPA 199 Query: 196 ENVYELNDELLTSGNLLPLGELETXXXXXXXXXXXXDTVLRIGDQQPAEAVLARDD--GY 253 + L D +L +G E + D + DQ+ + D G Sbjct: 200 SKHWTLTDRMLPTGEYRVTEEFKA--GKMAAGERLDDILAAEQDQEGNSTAVIADSLAGI 257 Query: 254 VLRYSADQEYFRHWVVYTNGTADQ--YLCIEPYTWLPDGPNLGKDDAFTGIITLEPRQTL 311 +RY D +F+HWVV+ NGT+DQ LCIEPYTW+ + PN+ + TG L P++ L Sbjct: 258 RVRYQCDG-HFKHWVVF-NGTSDQDDLLCIEPYTWMTNAPNVNLPKSVTGFRDLGPQEEL 315 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,060,443,987 Number of extensions: 90149701 Number of successful extensions: 139729 Number of sequences better than 1.0e-05: 82 Number of HSP's gapped: 139872 Number of HSP's successfully gapped: 82 Length of query: 324 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 188 Effective length of database: 1,779,438,163 Effective search space: 334534374644 Effective search space used: 334534374644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)