BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0006.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKQ1.1 B3KKQ1_9BACI Tryptophanyl-tRNA synthetase EC=6.1.1.2 522 e-146 B1DJ52.1 B1DJ52_9BACL Tryptophanyl-tRNA synthetase EC=6.1.1.2 518 e-145 B7DNS7.1 B7DNS7_9BACL Tryptophanyl-tRNA synthetase EC=6.1.1.2 435 e-120 C1PRE2.1 C1PRE2_ALIAC Tryptophanyl-tRNA synthetase EC=6.1.1.2 431 e-119 C2W552.1 C2W552_BACCE Tryptophanyl-tRNA synthetase 385 e-105 >B3KKQ1.1 B3KKQ1_9BACI Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 328 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 242/324 (74%), Positives = 282/324 (87%) Query: 3 KKVLSGIQPSGSLTLGNYIGAIKNFVKLQEEHECYFMVVDLHAITVSQDPAALRENSESV 62 K VLSGIQPSG+LTLGNYIGAIKNFVKLQ EH+CYFMVVDLHAITV Q+P++LR+ SESV Sbjct: 2 KTVLSGIQPSGNLTLGNYIGAIKNFVKLQNEHDCYFMVVDLHAITVPQEPSSLRDRSESV 61 Query: 63 AALYLAAGIDPKISNVYMQSHVQQHAELGWIMTTLTAMGELERMTQFKDKSSGKDSVGAG 122 AALY+AAGIDP +N+++QSHV QHAELGWIMTTL MGELERMTQFKDKS GK+SVGAG Sbjct: 62 AALYVAAGIDPNRANIFLQSHVPQHAELGWIMTTLVNMGELERMTQFKDKSEGKESVGAG 121 Query: 123 LFVYPSLMAADILVYNADLVPVGEDQKQHLELTRDLAGRFNHRFGDFFTVPEPYIPEVGA 182 LFVYP+LMAADIL+YNA+LVPVG+DQKQHLE+TRDLA RFNHRFG +F +PEP+IPEVGA Sbjct: 122 LFVYPALMAADILLYNANLVPVGDDQKQHLEITRDLAARFNHRFGPYFNIPEPFIPEVGA 181 Query: 183 RIMSLDDGTKKMSKSNPNPGSYIALLDPPDVIRKKISRATTDSGREVIFDPANKPEISNL 242 RIMSLDD +KKMSKSNP GSYIA+LD PD IRKKISRATTDSG EV++DP+ KPE+SNL Sbjct: 182 RIMSLDDASKKMSKSNPVEGSYIAMLDTPDQIRKKISRATTDSGAEVVYDPSAKPEVSNL 241 Query: 243 MSIYAECSGMTLQQIADRYEGQMYGGFKKDLGEVLVAALEPLQQKYREIRSSGALSDILX 302 MSIY+EC+G++LQ++ R+EG+MYG FKK+LGEV+VAALEPLQ +Y EIR +G + DIL Sbjct: 242 MSIYSECAGVSLQEVQSRFEGKMYGAFKKELGEVVVAALEPLQNRYHEIRQTGEIHDILA 301 Query: 303 XXXXXXXXXXXQTLAGVKEKMGFL 326 Q L GVK+KMGFL Sbjct: 302 KGAEQAQKTAAQILDGVKDKMGFL 325 >B1DJ52.1 B1DJ52_9BACL Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 329 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 248/327 (75%), Positives = 277/327 (84%) Query: 3 KKVLSGIQPSGSLTLGNYIGAIKNFVKLQEEHECYFMVVDLHAITVSQDPAALRENSESV 62 KKVLSGIQPSG LTLGNYIGA++NFVKLQE EC+FM+VDLHAITV Q+PA RE ESV Sbjct: 2 KKVLSGIQPSGQLTLGNYIGAMQNFVKLQETEECFFMIVDLHAITVPQEPAMFREQIESV 61 Query: 63 AALYLAAGIDPKISNVYMQSHVQQHAELGWIMTTLTAMGELERMTQFKDKSSGKDSVGAG 122 AAL++AAG+DP +N+++QSHV+ HAELGWIMTTLT MGELERMTQFKDKS+GKDSVGAG Sbjct: 62 AALFIAAGLDPAKANIFVQSHVRAHAELGWIMTTLTGMGELERMTQFKDKSAGKDSVGAG 121 Query: 123 LFVYPSLMAADILVYNADLVPVGEDQKQHLELTRDLAGRFNHRFGDFFTVPEPYIPEVGA 182 LFVYPSLMAADILVYNADLVPVG+DQKQHLELTRDLA RFN RFG+FFTVPEPYIP+VGA Sbjct: 122 LFVYPSLMAADILVYNADLVPVGDDQKQHLELTRDLASRFNSRFGEFFTVPEPYIPKVGA 181 Query: 183 RIMSLDDGTKKMSKSNPNPGSYIALLDPPDVIRKKISRATTDSGREVIFDPANKPEISNL 242 RIMSLDD +KKMSKSNPN GSYIALLD P VIRKKISRATTDSGREV +DPANKPEISNL Sbjct: 182 RIMSLDDASKKMSKSNPNAGSYIALLDEPSVIRKKISRATTDSGREVKYDPANKPEISNL 241 Query: 243 MSIYAECSGMTLQQIADRYEGQMYGGFKKDLGEVLVAALEPLQQKYREIRSSGALSDILX 302 +SIY+ C+ MT+ ++ RYEGQ YG FKKDL E +V LEPLQQKY+ IR SG + IL Sbjct: 242 ISIYSHCANMTIAEVEARYEGQGYGPFKKDLAEQVVNILEPLQQKYKAIRESGEIHAILK 301 Query: 303 XXXXXXXXXXXQTLAGVKEKMGFLPLR 329 +TLA VKEKMGFL R Sbjct: 302 QGAERASEIADRTLADVKEKMGFLAPR 328 >B7DNS7.1 B7DNS7_9BACL Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 327 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 207/326 (63%), Positives = 252/326 (77%) Query: 3 KKVLSGIQPSGSLTLGNYIGAIKNFVKLQEEHECYFMVVDLHAITVSQDPAALRENSESV 62 K+VLSGIQPSG+LT+GNY+GAI+NFVKLQ+E +C F VVD+HAITV QDP ALR N+ SV Sbjct: 2 KRVLSGIQPSGTLTIGNYLGAIRNFVKLQDEADCLFCVVDMHAITVPQDPEALRHNTRSV 61 Query: 63 AALYLAAGIDPKISNVYMQSHVQQHAELGWIMTTLTAMGELERMTQFKDKSSGKDSVGAG 122 AALYLA+GIDP S V++QSHV QHAELGWI+ T GELERMTQFKDKSS + V AG Sbjct: 62 AALYLASGIDPGKSTVFVQSHVPQHAELGWILQCFTYHGELERMTQFKDKSSRHEVVTAG 121 Query: 123 LFVYPSLMAADILVYNADLVPVGEDQKQHLELTRDLAGRFNHRFGDFFTVPEPYIPEVGA 182 LF YP LMAADIL+YNA LVPVGEDQKQHLELTRD+AGRFN RFGD F VPEPYIPE+G Sbjct: 122 LFTYPVLMAADILLYNAHLVPVGEDQKQHLELTRDVAGRFNRRFGDTFVVPEPYIPEIGG 181 Query: 183 RIMSLDDGTKKMSKSNPNPGSYIALLDPPDVIRKKISRATTDSGREVIFDPANKPEISNL 242 RIMSL++ KKMSKS+ + +YI++LD PD IR+KI RA TDS REV FDP KP +SNL Sbjct: 182 RIMSLENPEKKMSKSDESANAYISMLDDPDTIRRKIGRAVTDSEREVRFDPERKPAVSNL 241 Query: 243 MSIYAECSGMTLQQIADRYEGQMYGGFKKDLGEVLVAALEPLQQKYREIRSSGALSDILX 302 M+IYA C+ ++L+ + R+EGQ YG FKK+L EV++ L P+Q +Y+E+ +S L D+L Sbjct: 242 MTIYALCADVSLEDVERRFEGQGYGPFKKELAEVVIERLAPIQARYQELMASSELDDVLR 301 Query: 303 XXXXXXXXXXXQTLAGVKEKMGFLPL 328 TL V+ K+GFL + Sbjct: 302 KGAERAREIAAATLQEVQRKVGFLQI 327 >C1PRE2.1 C1PRE2_ALIAC Tryptophanyl-tRNA synthetase EC=6.1.1.2 Length = 330 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 251/324 (77%) Query: 3 KKVLSGIQPSGSLTLGNYIGAIKNFVKLQEEHECYFMVVDLHAITVSQDPAALRENSESV 62 K+VLSGIQPSG+LT+GNY+GAI+NFVKLQ+E +C F VVD+HAITV QDP ALR N+ +V Sbjct: 5 KRVLSGIQPSGTLTIGNYLGAIRNFVKLQDEADCLFCVVDMHAITVPQDPEALRHNTRAV 64 Query: 63 AALYLAAGIDPKISNVYMQSHVQQHAELGWIMTTLTAMGELERMTQFKDKSSGKDSVGAG 122 AALYLA+GIDP+ + V++QSHV QHAELGWI+ T GELERMTQFKDKSS + V AG Sbjct: 65 AALYLASGIDPEKATVFVQSHVPQHAELGWILQCFTYHGELERMTQFKDKSSRHEVVTAG 124 Query: 123 LFVYPSLMAADILVYNADLVPVGEDQKQHLELTRDLAGRFNHRFGDFFTVPEPYIPEVGA 182 LF YP LMAADIL+YNA LVPVGEDQKQHLELTRD+AGRFN RFGD F VPEPYIPE+G Sbjct: 125 LFTYPVLMAADILLYNAHLVPVGEDQKQHLELTRDVAGRFNRRFGDTFVVPEPYIPEIGG 184 Query: 183 RIMSLDDGTKKMSKSNPNPGSYIALLDPPDVIRKKISRATTDSGREVIFDPANKPEISNL 242 RIMSL++ KKMSKS+ + +YI++LD PD IR+KI RA TDS REV FDP KP +SNL Sbjct: 185 RIMSLENPEKKMSKSDESANAYISMLDDPDTIRRKIGRAVTDSEREVRFDPERKPAVSNL 244 Query: 243 MSIYAECSGMTLQQIADRYEGQMYGGFKKDLGEVLVAALEPLQQKYREIRSSGALSDILX 302 M+IYA C+ ++L+ + R+ GQ YG FKK+L EV++ L P+Q +Y+E+ +S L D+L Sbjct: 245 MTIYALCADVSLEDVERRFGGQGYGPFKKELAEVVIERLAPIQARYQEVMASSELDDVLR 304 Query: 303 XXXXXXXXXXXQTLAGVKEKMGFL 326 TL V+ K+GFL Sbjct: 305 KGAERARELAAATLRDVQRKVGFL 328 >C2W552.1 C2W552_BACCE Tryptophanyl-tRNA synthetase Length = 329 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/321 (57%), Positives = 238/321 (74%) Query: 5 VLSGIQPSGSLTLGNYIGAIKNFVKLQEEHECYFMVVDLHAITVSQDPAALRENSESVAA 64 + SGIQPSG++TLGNY+GA+K F +LQ EH+CYF +V+ HAITV+QDP LR+N S+AA Sbjct: 4 IFSGIQPSGTITLGNYLGAMKQFTELQNEHDCYFCIVNQHAITVAQDPVQLRKNIRSLAA 63 Query: 65 LYLAAGIDPKISNVYMQSHVQQHAELGWIMTTLTAMGELERMTQFKDKSSGKDSVGAGLF 124 LY+A GIDP+ + +++QS V HA+LGWIM ++ +GELERMTQ+KDKSSG+DSV AGL Sbjct: 64 LYVACGIDPEKATLFVQSEVPAHAQLGWIMQSIAYVGELERMTQYKDKSSGRDSVPAGLL 123 Query: 125 VYPSLMAADILVYNADLVPVGEDQKQHLELTRDLAGRFNHRFGDFFTVPEPYIPEVGARI 184 YP LMAADIL+YN ++VPVG+DQKQH+ELTRDLA RFN RF + FT+PE IP+VGAR+ Sbjct: 124 TYPPLMAADILLYNTEIVPVGDDQKQHMELTRDLAERFNKRFREIFTIPEIRIPKVGARV 183 Query: 185 MSLDDGTKKMSKSNPNPGSYIALLDPPDVIRKKISRATTDSGREVIFDPANKPEISNLMS 244 MSL + TKKMSKS+PNP S I++LD P I KKI A TDS V +D NKP ISNL++ Sbjct: 184 MSLTEPTKKMSKSDPNPKSMISMLDDPKTIEKKIKSAVTDSDGIVKYDKENKPGISNLLT 243 Query: 245 IYAECSGMTLQQIADRYEGQMYGGFKKDLGEVLVAALEPLQQKYREIRSSGALSDILXXX 304 IY+ SG T+++I YEG+ YG FK DL +V+V A+ P+Q+KY E+ +S L +IL Sbjct: 244 IYSSFSGKTIEEIVAAYEGKGYGDFKGDLAQVVVEAIRPIQEKYNELINSPELDEILDKG 303 Query: 305 XXXXXXXXXQTLAGVKEKMGF 325 + L V+ MG Sbjct: 304 AEKANHVAFKQLRKVENAMGL 324 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,880,465,058 Number of extensions: 78891324 Number of successful extensions: 184961 Number of sequences better than 1.0e-05: 1916 Number of HSP's gapped: 180735 Number of HSP's successfully gapped: 1929 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)