BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0420.0002.p
         (64 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKP8.1 B3KKP8_9BACI Protoheme IX farnesyltransferase                 85   2e-15
B1DJ46.1 B1DJ46_9BACL Protoheme IX farnesyltransferase                 59   1e-07
C4L5D7.1 C4L5D7_EXISA Protoheme IX farnesyltransferase                 56   1e-06
B7GGM1.1 B7GGM1_ANOFW Heme O synthase (Polyprenyltransferase)          54   4e-06

>B3KKP8.1 B3KKP8_9BACI Protoheme IX farnesyltransferase
          Length = 312

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 50/61 (81%)

Query: 1   MYVYDYAGIFYLVISAGLSLAWLYLTLKGFRAKDDDAWAKQNFFFSINYLTVSLIVLVLN 60
           MY Y YAGIF+LVI   L++ WLY  L+GFRAKDD+AW+K+ F  SINYLT+SLIVL+LN
Sbjct: 250 MYAYGYAGIFFLVIGLLLAIWWLYAALQGFRAKDDEAWSKKVFIISINYLTLSLIVLILN 309

Query: 61  T 61
           T
Sbjct: 310 T 310


>B1DJ46.1 B1DJ46_9BACL Protoheme IX farnesyltransferase
          Length = 284

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 1   MYVYDYAGIFYLVISAGLSLAWLYLTLKGFRAKDDDAWAKQNFFFSINYLTVSLIVLVLN 60
           +Y Y Y GI +L++S    + W   TL+G +A++ + WAK NF  S+NYL V  IV++ N
Sbjct: 222 LYTYGYTGIVFLILSVIAGVVWAVHTLQGIKAENTEKWAKVNFLISVNYLMVVFIVMMAN 281

Query: 61  TIH 63
           T+ 
Sbjct: 282 TVK 284


>C4L5D7.1 C4L5D7_EXISA Protoheme IX farnesyltransferase
          Length = 307

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 8   GIFYLVISAGLSLAWLYLTLKGFRAKDDDAWAKQNFFFSINYLTVSLIVLVLNTI 62
           G+ YL ++AGL   WLYL LKGF A+D+  WA + FF+S+ YL V +I L+L  +
Sbjct: 252 GLVYLTVAAGLGGYWLYLGLKGFNAEDEIKWANKMFFYSLIYLVVWIIALILTAL 306


>B7GGM1.1 B7GGM1_ANOFW Heme O synthase (Polyprenyltransferase)
          Length = 301

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 38/55 (69%)

Query: 8   GIFYLVISAGLSLAWLYLTLKGFRAKDDDAWAKQNFFFSINYLTVSLIVLVLNTI 62
           G+ +LVI+  L++ WL L L GF+ KDD  WAK  F +S+NYLT+  + +V+ TI
Sbjct: 246 GVPFLVIATLLNVGWLALGLAGFKMKDDMKWAKWMFIYSLNYLTILFVTMVIVTI 300


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.144    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 381,010,226
Number of extensions: 11722940
Number of successful extensions: 30805
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 30859
Number of HSP's successfully gapped: 22
Length of query: 64
Length of database: 3,060,696,203
Length adjustment: 36
Effective length of query: 28
Effective length of database: 2,721,539,663
Effective search space: 76203110564
Effective search space used: 76203110564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)