BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0420.0001.p (206 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKP7.1 B3KKP7_9BACI Electron transport protein SCO1/SenC 227 5e-58 B1DJ45.1 B1DJ45_9BACL Electron transport protein SCO1/SenC 144 4e-33 C0ZJX6.1 C0ZJX6_BREBN Putative uncharacterized protein 140 9e-32 Q45436.1 Q45436_BACSP MnxC 124 5e-27 A6CPF5.1 A6CPF5_9BACI Manganese oxidation 124 5e-27 >B3KKP7.1 B3KKP7_9BACI Electron transport protein SCO1/SenC Length = 205 Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 135/205 (65%) Query: 1 VQTLKRYKWTWXXXXXXXXXXXXXXXXXWNKGNDKLPVIGEVQDFSLENVDGRPITLADT 60 + KRYKWTW G +K P++ EV +S+ENVDG+ IT DT Sbjct: 1 MNAFKRYKWTWVLLAICVIAAIYLVYNSLGFGKEKFPIVREVAAYSMENVDGKTITSEDT 60 Query: 61 EGKPRLVYFFFTECPDVCPITTFMLSQTQDLLKKDGSFGKDVEFVSISFDPLNDTREAIK 120 +GK +L+YF+FT CPDVCPITT +LSQ Q+ LKK+G FGK+V FVSISFDP DT+E IK Sbjct: 61 KGKVKLMYFYFTSCPDVCPITTLVLSQIQEDLKKEGLFGKEVNFVSISFDPETDTKEKIK 120 Query: 121 AFADRFHADYSGWYFLRGDQEQVRTLAADSFKVLIYGDNKDNFAHANLIGLVDRNNRLRG 180 F DRF+ADYSGWYFLRGDQE+ R L +SFK+ + G+N NF H N I LVDR+N +R Sbjct: 121 EFGDRFYADYSGWYFLRGDQEETRKLMQESFKIPLLGNNSTNFTHGNSIALVDRDNNIRK 180 Query: 181 LYDAGDTENVTPEFLAGALKKLARE 205 Y+A D V E + +K L +E Sbjct: 181 TYNAADPSEVKTEDIVKDIKALIKE 205 >B1DJ45.1 B1DJ45_9BACL Electron transport protein SCO1/SenC Length = 209 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 108/179 (60%), Gaps = 4/179 (2%) Query: 30 NKGNDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQ 89 + G K+PV F L++++G ++L T GK RLVYF++ CPDVCP TTFM+S+ + Sbjct: 32 SSGGSKMPVQMAAPSFELKDINGNEVSLDSTNGKARLVYFYWASCPDVCPPTTFMISEAE 91 Query: 90 DLLKKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHA--DYSGWYFLRGDQEQVRTLA 147 D L++ G G E +SI+FDP +DT + I+ FA R A D GW FLRGD E+ Sbjct: 92 DQLREAGLLGTKAELISITFDPSHDTPDVIRDFATRNFAQLDEGGWDFLRGDDEEASIKL 151 Query: 148 ADSFKVLIYGDNKD-NFAHANLIGLVDRNNRLRGLYDAGDTENVTPEFLAGALKKLARE 205 A F V + D +F H N+I LVD+ ++R + D E++TPE L LK+LA+E Sbjct: 152 ARDFGVSVKKDEASKSFIHMNVITLVDKKGQIRKWINGSD-ESLTPESLVSDLKQLAKE 209 >C0ZJX6.1 C0ZJX6_BREBN Putative uncharacterized protein Length = 217 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 3/171 (1%) Query: 33 NDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLL 92 +K+ V+ + DF+L+N DG T + GK RLV F FT+CPD+CP TTF +++ QD L Sbjct: 49 KEKIEVLKPIADFTLDNSDGTTYTFHSSAGKVRLVEFMFTKCPDICPATTFNMAKLQDQL 108 Query: 93 KKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFK 152 K+ G FG VEFVSISFDP NDT E ++ +A +F AD SGW FLRGD + V + D F Sbjct: 109 KEKGLFGDKVEFVSISFDPDNDTPEVLQDYAAKFKADQSGWKFLRGDAQAVEKVTKD-FG 167 Query: 153 VLIYGDNKDNFAHANLIGLVDRNNRLRGLYDAGDTENVTPEFLAGALKKLA 203 +++ ++AH + LVD + +R Y G N+ E + + +LA Sbjct: 168 LMVIKQPDGSYAHTARMFLVDGDGNMRRAY--GMAANMELEVMMKEMVQLA 216 >Q45436.1 Q45436_BACSP MnxC Length = 195 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 33 NDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLL 92 ++LP++G V++ +LE+VDG L D K +LV FF+T CPD+CP+T F L Q + L Sbjct: 25 QERLPLLGSVENAALESVDGSTFQLHDQ--KIKLVVFFYTHCPDICPMTLFDLEQVKKEL 82 Query: 93 KKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFK 152 + F + V F+SI+ DP DT+E ++ +A F D++GW LRGD +A D FK Sbjct: 83 ETKNLFKEKVRFISITLDPEVDTQERLQEYAQNFSVDHAGWMMLRGDTSTTEQIAKD-FK 141 Query: 153 VLIYGDNKDNFA-HANLIGLVDRNNRLRGLYDAG 185 +IY N+ F H+ + LVD NN++R +D Sbjct: 142 -MIYQKNESGFVTHSTTMYLVDANNKIRAYHDMA 174 >A6CPF5.1 A6CPF5_9BACI Manganese oxidation Length = 195 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 5/154 (3%) Query: 33 NDKLPVIGEVQDFSLENVDGRPITLADTEGKPRLVYFFFTECPDVCPITTFMLSQTQDLL 92 ++LP++G V++ +LE+VDG L D K +LV FF+T CPD+CP+T F L Q + L Sbjct: 25 QERLPLLGSVENAALESVDGSTFQLHDQ--KIKLVVFFYTHCPDICPMTLFDLEQVKKEL 82 Query: 93 KKDGSFGKDVEFVSISFDPLNDTREAIKAFADRFHADYSGWYFLRGDQEQVRTLAADSFK 152 + F + V F+SI+ DP DT+E ++ +A F D++GW LRGD +A D FK Sbjct: 83 ETKNLFKEKVRFISITLDPEVDTQERLQEYAQNFSVDHAGWMMLRGDTSTTEQIAKD-FK 141 Query: 153 VLIYGDNKDNFA-HANLIGLVDRNNRLRGLYDAG 185 +IY N+ F H+ + LVD NN++R +D Sbjct: 142 -MIYQKNESGFVTHSTTMYLVDANNKIRAYHDMA 174 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,176,310,334 Number of extensions: 48260740 Number of successful extensions: 101581 Number of sequences better than 1.0e-05: 910 Number of HSP's gapped: 101004 Number of HSP's successfully gapped: 911 Length of query: 206 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 77 Effective length of database: 1,845,385,268 Effective search space: 142094665636 Effective search space used: 142094665636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)