BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0021.p
         (115 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O07949.1 YRAF_BACSU Spore coat protein F-like protein yraF            191   2e-47
A7Z1V6.1 A7Z1V6_BACA2 YraF                                            181   1e-44
B3KFD4.1 B3KFD4_9BACI AraC protein arabinose-binding/dimerisation     179   6e-44
C0Z4Q2.1 C0Z4Q2_BREBN Putative spore coat protein F                   177   3e-43
Q2BDE2.1 Q2BDE2_9BACI Putative uncharacterized protein                176   5e-43

>O07949.1 YRAF_BACSU Spore coat protein F-like protein yraF
          Length = 122

 Score =  191 bits (485), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 99/109 (90%)

Query: 1   MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
           +PE+AD TFA DFL+RAKEGVRN ++ALTETASPDVRALL   L QGIAMHQEITELM+ 
Sbjct: 14  VPELADTTFAMDFLIRAKEGVRNTAVALTETASPDVRALLRKQLMQGIAMHQEITELMIS 73

Query: 61  KKWFHPYELNEQYQLDQLSAKNTVMIGQMNLFPDDTSRKGMFDRTPDGH 109
           KKWFHPYEL+EQY+LDQLSAKNT+M+G MNLFPD+T+RKGMFDRTPD H
Sbjct: 74  KKWFHPYELSEQYKLDQLSAKNTIMVGNMNLFPDETNRKGMFDRTPDEH 122


>A7Z1V6.1 A7Z1V6_BACA2 YraF
          Length = 122

 Score =  181 bits (460), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/109 (76%), Positives = 98/109 (89%)

Query: 1   MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
           +PE+ADMTFA DFL+RAKEGVRN ++ALTETASPDVRALL   L QGI MHQEIT+LM+ 
Sbjct: 14  VPELADMTFAMDFLIRAKEGVRNTAVALTETASPDVRALLRKQLMQGITMHQEITDLMVS 73

Query: 61  KKWFHPYELNEQYQLDQLSAKNTVMIGQMNLFPDDTSRKGMFDRTPDGH 109
           KKWFHP++L+EQY+LDQLSAKNT+M+G MNLFP +T+RKGMFDRTPD H
Sbjct: 74  KKWFHPHDLSEQYKLDQLSAKNTLMVGSMNLFPVETNRKGMFDRTPDEH 122


>B3KFD4.1 B3KFD4_9BACI AraC protein arabinose-binding/dimerisation
          Length = 261

 Score =  179 bits (454), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 85/93 (91%), Positives = 89/93 (95%), Gaps = 1/93 (1%)

Query: 24  LSIA-LTETASPDVRALLHNHLKQGIAMHQEITELMMRKKWFHPYELNEQYQLDQLSAKN 82
           +SIA + + ASPDVRALLHNHLKQGIAMHQEITELM+RKKWFHPYELNEQYQLDQLSAKN
Sbjct: 169 VSIARIYKAASPDVRALLHNHLKQGIAMHQEITELMIRKKWFHPYELNEQYQLDQLSAKN 228

Query: 83  TVMIGQMNLFPDDTSRKGMFDRTPDGHIGGHKA 115
           TVMIGQMNLFPDDTSRKGMFDRTPD HIGGHKA
Sbjct: 229 TVMIGQMNLFPDDTSRKGMFDRTPDEHIGGHKA 261


>C0Z4Q2.1 C0Z4Q2_BREBN Putative spore coat protein F
          Length = 123

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 92/109 (84%)

Query: 1   MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
           MPE ADMTFA DFL+RAKEGVRN +IALTET +P+ RA+L   L QGIA+HQEI ELM+ 
Sbjct: 14  MPEKADMTFAMDFLIRAKEGVRNTAIALTETITPEARAVLRKQLHQGIALHQEIAELMLS 73

Query: 61  KKWFHPYELNEQYQLDQLSAKNTVMIGQMNLFPDDTSRKGMFDRTPDGH 109
           KKWFHPYEL+EQYQLD LSA  T+ IGQMNLFP+DTSRK MFDRTPD H
Sbjct: 74  KKWFHPYELHEQYQLDHLSALETIQIGQMNLFPEDTSRKSMFDRTPDEH 122


>Q2BDE2.1 Q2BDE2_9BACI Putative uncharacterized protein
          Length = 123

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/107 (73%), Positives = 94/107 (87%)

Query: 1   MPEMADMTFATDFLLRAKEGVRNLSIALTETASPDVRALLHNHLKQGIAMHQEITELMMR 60
           MPE+ADMTFA DFL+R KE VRN+++ALTE A+PDVR LL   L QGI MHQEI+ELM+ 
Sbjct: 14  MPELADMTFALDFLIRTKEAVRNMAVALTEAATPDVRVLLRKQLMQGIQMHQEISELMIS 73

Query: 61  KKWFHPYELNEQYQLDQLSAKNTVMIGQMNLFPDDTSRKGMFDRTPD 107
           KKWFHP++L+EQY+LDQLSAKNT+MIG MNLFP +T+RKGMFDRTPD
Sbjct: 74  KKWFHPHDLSEQYKLDQLSAKNTIMIGSMNLFPRETNRKGMFDRTPD 120


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 660,575,044
Number of extensions: 21347036
Number of successful extensions: 45388
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 45388
Number of HSP's successfully gapped: 20
Length of query: 115
Length of database: 3,060,696,203
Length adjustment: 82
Effective length of query: 33
Effective length of database: 2,288,172,973
Effective search space: 75509708109
Effective search space used: 75509708109
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)