BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0019.p
         (66 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2BDE0.1 Q2BDE0_9BACI Putative uncharacterized protein                 66   8e-10
C0Z4Q0.1 C0Z4Q0_BREBN Putative uncharacterized protein yraE            61   2e-08
O06011.1 YRAE_BACSU Uncharacterized protein yraE                       61   3e-08
A7Z1V4.1 A7Z1V4_BACA2 YraE                                             59   2e-07

>Q2BDE0.1 Q2BDE0_9BACI Putative uncharacterized protein
          Length = 64

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 36/39 (92%)

Query: 4  NYALHEMLEVHEIAAFKTVCMTKSKTMQALVTDPELMRI 42
          +Y LHE+LEV EIAAFKT+C+TKSKTM+ALVTDP+L +I
Sbjct: 2  DYLLHEILEVQEIAAFKTLCLTKSKTMKALVTDPQLKQI 40


>C0Z4Q0.1 C0Z4Q0_BREBN Putative uncharacterized protein yraE
          Length = 64

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/39 (66%), Positives = 32/39 (82%)

Query: 4  NYALHEMLEVHEIAAFKTVCMTKSKTMQALVTDPELMRI 42
          +Y LHE LE+HEIA FKT+CMTKSKTMQ LV+D  L ++
Sbjct: 2  SYGLHEQLELHEIATFKTICMTKSKTMQGLVSDETLRQL 40


>O06011.1 YRAE_BACSU Uncharacterized protein yraE
          Length = 65

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/39 (69%), Positives = 34/39 (87%)

Query: 4  NYALHEMLEVHEIAAFKTVCMTKSKTMQALVTDPELMRI 42
           YALHE+LEV E+ AFKT+C+TKSKTM+ALV+DP+L  I
Sbjct: 2  EYALHEVLEVQEMTAFKTLCLTKSKTMKALVSDPKLKEI 40


>A7Z1V4.1 A7Z1V4_BACA2 YraE
          Length = 65

 Score = 58.5 bits (140), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 34/37 (91%)

Query: 6  ALHEMLEVHEIAAFKTVCMTKSKTMQALVTDPELMRI 42
          ALHE+LE+ E+A+FK++C+TKSKTM+ALV+DP+L  I
Sbjct: 4  ALHELLEIQEMASFKSLCLTKSKTMKALVSDPQLKEI 40


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.125    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 205,284,772
Number of extensions: 3584231
Number of successful extensions: 5184
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5184
Number of HSP's successfully gapped: 4
Length of query: 66
Length of database: 3,060,696,203
Length adjustment: 38
Effective length of query: 28
Effective length of database: 2,702,697,633
Effective search space: 75675533724
Effective search space used: 75675533724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)