BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0018.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z4P9.1 C0Z4P9_BREBN Putative spore coat protein F                   121   2e-26
A7Z1V3.1 A7Z1V3_BACA2 YraD                                            108   1e-22
O06010.1 YRAD_BACSU Spore coat protein F-like protein yraD            108   1e-22
Q97LE8.1 Q97LE8_CLOAB Spore coat protein F                             99   1e-19
Q65JC0.1 Q65JC0_BACLD YraD                                             95   2e-18

>C0Z4P9.1 C0Z4P9_BREBN Putative spore coat protein F
          Length = 97

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 70/80 (87%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          VIAMD L++AKSGVRNYAMA+TE  TPEIK  L KQL+EAID HEKI++Y+++RG YHP+
Sbjct: 18 VIAMDLLISAKSGVRNYAMALTETGTPEIKATLTKQLEEAIDLHEKISLYMIERGWYHPW 77

Query: 61 HIPEQIQLDLKNIQTAMNIP 80
          +I EQI+LD +NIQTA+++P
Sbjct: 78 NIAEQIELDQQNIQTALHLP 97


>A7Z1V3.1 A7Z1V3_BACA2 YraD
          Length = 99

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 65/80 (81%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          ++AMD L +AKSGVRNYAMA TE  TPE+K IL + L+EAID HE+I+ Y+M++G YHP+
Sbjct: 18 IVAMDLLNSAKSGVRNYAMAATEAGTPEVKAILTRHLEEAIDMHEQISRYMMEKGWYHPW 77

Query: 61 HIPEQIQLDLKNIQTAMNIP 80
          +  EQ++L+L+NI TA+ +P
Sbjct: 78 NTNEQVRLNLQNIDTALRLP 97


>O06010.1 YRAD_BACSU Spore coat protein F-like protein yraD
          Length = 99

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 69/81 (85%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          +IAMD L++AK+GVRNYAMA TE  TPE+K++L++ L+EA+D HE+++ Y+M++G YHP+
Sbjct: 18 IIAMDLLISAKNGVRNYAMAATEAGTPEVKEVLIRHLEEALDMHEQLSSYMMEKGWYHPW 77

Query: 61 HIPEQIQLDLKNIQTAMNIPS 81
          +  EQ++L+LKNI TA+ +P+
Sbjct: 78 NPDEQVKLNLKNIDTAIQLPT 98


>Q97LE8.1 Q97LE8_CLOAB Spore coat protein F
          Length = 98

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 61/79 (77%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          V+A DFL++ KSGV+NYA+A+TE ATP ++ IL K LDE I+ HEKI  Y+M  G YHPY
Sbjct: 18 VVATDFLISTKSGVKNYAVAITETATPRVRAILRKHLDEGINCHEKILNYMMTNGYYHPY 77

Query: 61 HIPEQIQLDLKNIQTAMNI 79
          ++ EQ + D+K+ +T++N+
Sbjct: 78 NMQEQYKTDMKSTETSLNL 96


>Q65JC0.1 Q65JC0_BACLD YraD
          Length = 99

 Score = 95.1 bits (235), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 64/80 (80%)

Query: 1  VIAMDFLMNAKSGVRNYAMAVTECATPEIKQILMKQLDEAIDSHEKITIYIMQRGLYHPY 60
          VIA DFL++AK+GV+N A A+TE ++PE+++ L + L++AID+HE+IT Y++ +G YHP 
Sbjct: 18 VIATDFLISAKTGVKNIATAITETSSPEVRETLKQYLNDAIDTHEQITNYMISKGYYHPA 77

Query: 61 HIPEQIQLDLKNIQTAMNIP 80
          ++ EQIQ+D K  +TA ++P
Sbjct: 78 NLSEQIQIDTKAAETAKDLP 97


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 415,895,306
Number of extensions: 12177772
Number of successful extensions: 34402
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 34404
Number of HSP's successfully gapped: 61
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)