BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0016.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator 122 2e-26 A7B0B9.1 A7B0B9_RUMGN Putative uncharacterized protein 120 1e-25 A6LYR8.1 A6LYR8_CLOB8 Helix-turn-helix-domain containing protein... 116 1e-24 Q97FW8.1 Q97FW8_CLOAB Trancriptional regulator of AraC family 110 6e-23 B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein 108 3e-22 >C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator Length = 278 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 2/178 (1%) Query: 26 TQLSGCFDYRPKGKGNIVHLEESQLQQFLRLTGTLEEALSSD-AYGSDIIANSAIAQLLV 84 T LS CF + NI+ L E+ L +F+ L L L A+G+DI ++ +L+ Sbjct: 102 TDLSTCFKVDKSKEINILKLNETDLSEFVSLCDKLIAVLDQPTAFGNDIRERILLSDILL 161 Query: 85 LTNTIFHNASFIPADIMPELVRKTMDYIEAHLGQNITLEQLAGIFHLNSTYISRQFKKHT 144 L N + N + P +I+P L++ + +I+ +L +++L ++ F+LN +Y++R FK++ Sbjct: 162 LINQV-DNITNQPQNIIPALLQNMIRFIDTNLANDLSLSAISQHFYLNQSYLNRYFKRYM 220 Query: 145 GLTLRSYILDRRVSLAKSYLSEGLSITEACYQSGFSDYANFIRSFTRIAGISPGRFVK 202 GL++ YI + R++ AK L G S+T+AC Q GF +Y+NFIR+FTR GISPG++ K Sbjct: 221 GLSIHKYISESRINQAKILLKAGKSVTDACNQCGFGNYSNFIRAFTRYVGISPGKYKK 278 >A7B0B9.1 A7B0B9_RUMGN Putative uncharacterized protein Length = 273 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 9/200 (4%) Query: 9 LLTSRNPICTASLXXXXTQLSGCFDYRPKGKGNIVHLEESQLQQFLRLTGTLEEALSSDA 68 ++ S +P + T L+ CF +R + +HL + +F+ L S+ Sbjct: 74 IILSIDPEYLKQISTEKTDLNHCFQFRGTDMPHQLHLSAEEQTRFIYFIHKLR---SNSG 130 Query: 69 YGSDIIANSAIAQLLVLTNTIFHNASFIPADIMPEL------VRKTMDYIEAHLGQNITL 122 +G D++ + +L+V N F A+ P+ V + + YI H+ +N+TL Sbjct: 131 FGEDVLDRATFLELMVFLNNAFDKRCRSSAEEEPKTPGYHAQVDEILSYINTHISENLTL 190 Query: 123 EQLAGIFHLNSTYISRQFKKHTGLTLRSYILDRRVSLAKSYLSEGLSITEACYQSGFSDY 182 E+L+ F L+S+Y+ R FK TG T+ YI +R++++KS LS+G S+ EAC GF+DY Sbjct: 191 EELSAHFFLSSSYLCRIFKATTGTTINKYITAKRITISKSLLSQGYSVNEACEACGFNDY 250 Query: 183 ANFIRSFTRIAGISPGRFVK 202 +N++++FT+ GISP ++ + Sbjct: 251 SNYLKAFTKAVGISPKKYAQ 270 >A6LYR8.1 A6LYR8_CLOB8 Helix-turn-helix-domain containing protein, AraC type Length = 285 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 111/196 (56%), Gaps = 7/196 (3%) Query: 9 LLTSRNPICTASLXXXXTQLSGCFDYRPKGKGNIVHLEESQLQQFLRLTGTLEEALSSDA 68 ++ S +P S+ T LS CF R + + + L + Q Q FL + + ++++ Sbjct: 87 IVISIHPEFLKSISSDKTDLSYCFTNRSENSNHKISLNKEQQQHFLYF---INKIIATNG 143 Query: 69 YGSDIIANSAIAQLLVLTNTIFHNASFIPADIMP----ELVRKTMDYIEAHLGQNITLEQ 124 YGSDII ++ +L+ L N I+ + + D + V++ + YI ++ + IT++ Sbjct: 144 YGSDIIEYASFLELITLLNGIYIANNNLHVDDHSYKYNQQVQEIITYINENITEPITIDY 203 Query: 125 LAGIFHLNSTYISRQFKKHTGLTLRSYILDRRVSLAKSYLSEGLSITEACYQSGFSDYAN 184 LA F+L+ +YI R FK TG T+ YI RR+++AKS L+ G ++ E C + GF+DY N Sbjct: 204 LANHFYLSPSYICRIFKSATGTTINKYISARRITIAKSLLANGTNVNEVCEKCGFNDYTN 263 Query: 185 FIRSFTRIAGISPGRF 200 F+++F GISP ++ Sbjct: 264 FLKTFKNAVGISPKKY 279 >Q97FW8.1 Q97FW8_CLOAB Trancriptional regulator of AraC family Length = 284 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 5/202 (2%) Query: 1 MNPSMSGLLLTSRNPICTASLXXXXTQLSGCFDYRPKGKGNIVHLEESQLQQFLRLTGTL 60 +N S ++ S +P SL T L+ CF +R + V L + Q +F+ + Sbjct: 80 VNNSTHERIVISIHPDFLKSLCTSKTNLTYCFKHRGSNFCHKVSLNKEQQSRFMYF---I 136 Query: 61 EEALSSDAYGSDIIANSAIAQLLVLTNTIFHN--ASFIPADIMPELVRKTMDYIEAHLGQ 118 + + S +G+D+I ++ +L++ ++F N S P + + + YI ++ Sbjct: 137 NKIIGSHGFGADMIEYASFIELMIFLTSLFINNGESLTPIYKYSNQIEEIIRYINDNVTN 196 Query: 119 NITLEQLAGIFHLNSTYISRQFKKHTGLTLRSYILDRRVSLAKSYLSEGLSITEACYQSG 178 +IT++ LA F L+ +YI R FK TG T+ YI RR+S+AK+ LS G SI + + G Sbjct: 197 DITVKHLAEHFFLSESYICRIFKLSTGTTINKYITARRISMAKALLSNGSSINDVYVKCG 256 Query: 179 FSDYANFIRSFTRIAGISPGRF 200 F+DY+NF++SF + GISP ++ Sbjct: 257 FNDYSNFLKSFKKAVGISPKKY 278 >B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein Length = 286 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 100/178 (56%), Gaps = 3/178 (1%) Query: 28 LSGCFDYRPKGKGNIVHLEESQLQQFLRLTGTLEEALSSDAYGSDIIANSAIAQLLVLTN 87 L CF+ K N++ LE++ + ++ +++ S G + + S + Q +V N Sbjct: 105 LLSCFELASKQGFNLLRLEDNWIDIIKKILFDIKDTFKSKDLGYETLRISLLLQFIVYIN 164 Query: 88 TIF---HNASFIPADIMPELVRKTMDYIEAHLGQNITLEQLAGIFHLNSTYISRQFKKHT 144 +F N + E + ++YI HL QN++++ L+ F+++ Y+ +FK+ T Sbjct: 165 RLFLKQKNTKELYDIKYDERINDILNYINGHLDQNLSIDFLSSEFYVSKYYLMHKFKEQT 224 Query: 145 GLTLRSYILDRRVSLAKSYLSEGLSITEACYQSGFSDYANFIRSFTRIAGISPGRFVK 202 G T+ +YIL +R+ ++ + G +I EAC QSGF DY+NFIR+F ++ G+SP ++ K Sbjct: 225 GYTIHAYILQKRLIMSNLLIKNGKNIAEACVQSGFGDYSNFIRAFKKMFGVSPNKYYK 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,059,316,209 Number of extensions: 37599851 Number of successful extensions: 122874 Number of sequences better than 1.0e-05: 2538 Number of HSP's gapped: 126339 Number of HSP's successfully gapped: 2538 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)