BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0015.p
         (667 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0BQ53.1 C0BQ53_9BIFI Putative uncharacterized protein                591   e-167
A6DQY3.1 A6DQY3_9BACT Putative uncharacterized protein                 64   6e-08

>C0BQ53.1 C0BQ53_9BIFI Putative uncharacterized protein
          Length = 733

 Score =  591 bits (1524), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/677 (44%), Positives = 410/677 (60%), Gaps = 23/677 (3%)

Query: 8   DMHMELIITARSKFQEDTEYTGLNGHGLHASIEITGGTGSANQPFQAMVRITNLGGATWS 67
           ++ M L  +AR +      Y  L+  GL   ++  GG GS   P++  V + N G   + 
Sbjct: 36  EVGMALECSAR-RADGAGRYVRLDECGLAVEVDWHGGNGSPADPWRCTVTVRNDGSVAFE 94

Query: 68  GVIHVELPF-AKANPRFFLPAFMYARNCGEAPQNVPNEFPRLREGSPSRPSSPWWMVRSD 126
           GV+ +++P  A   PRFFLP FMY RN GEAP     +FPRLRE S   P+S WWM+R D
Sbjct: 95  GVVRIDIPIRADGEPRFFLPGFMYGRNRGEAPLRTATKFPRLRERS-ELPASSWWMIRGD 153

Query: 127 RLSHPAALVYDNGKIFGLCASPYFISREGDKTQWKPELAGE--FYQYSGYTCSLAK---- 180
           RLS+P AL     ++ G+ +SPY + R GD      E   E  F QY+G++C L      
Sbjct: 154 RLSNPCALAVTRSRVVGVVSSPYLVDR-GDGMLVGHEACDELPFVQYAGFSCMLPTPGIV 212

Query: 181 -----GTVGYTLGYENAPLLFIKSRLVKERAPLDENCFELAASESVEFTLDLYEYEAESE 235
                 +VG T+GYENAP LF+ S  ++ER    E    LA   +    LD+ +  A  E
Sbjct: 213 PCDDHASVGVTIGYENAPWLFVSSTDIRERPDSAEGPITLAPGGAAIMRLDVVDAPARDE 272

Query: 236 LGINAAIEEIYSRYHQPPRPGSDLRTAAADLSQAIYQYAWLPEERNYSTFVYEDKETGG- 294
             I   +E +Y R+H+PPR       A  D++ A+ + AWL +E  Y+ FV++    G  
Sbjct: 273 RAIIPVLETVYRRFHEPPRQVGAPARAIRDIAVAVDRDAWLEDEHMYAGFVFDHHSPGDE 332

Query: 295 ------YRYNKIISISWTDGLPVAXXXXXXX-XLRDEPMRCQALSCIQNIAENSLNPASG 347
                 Y Y ++ S SWT+G+  A         L D+ MR  AL  I++I ++ +NP +G
Sbjct: 333 IIEGKPYMYRRLGSSSWTNGMASAVPMLASAWRLGDDAMRRHALDGIEHIIQHCINPTNG 392

Query: 348 LPYEAYQNGKWSINGWWFDGMRTPGHSAYLCAQALFYIMKAYEFEKRLHNILHGDWMVFX 407
           LPY A ++ +WS  GWWFDG+  PGHS YL  Q ++  ++A++ E+R   I H DW+   
Sbjct: 393 LPYTAVEHERWSNRGWWFDGLSNPGHSGYLVGQTMYSALRAWQIERRFGGIDHSDWLKII 452

Query: 408 XXXXXXXXXSKNSDDEYPSILSERTGAGLEYDSFSGTWCMAAMAYYSWLTGDSTHLDSLK 467
                     +N+  EYP +  E  G+G EY+SF G WC+AA AY++ LTGD + LD + 
Sbjct: 453 GNVIPRLAAGRNAVGEYPFVFDEMDGSGAEYESFGGVWCLAASAYWALLTGDHSDLDGML 512

Query: 468 RSEKHYYEAYVRRMECYGAPLDADKAVDSEGILAYIKAVRYLHALTGDALYLDHMRDAIG 527
            SE+HY+  YV  MECYGAPLD  KAVDSEGIL YIKAV  L+A+TGDA+YLD MR+A  
Sbjct: 513 LSERHYHNRYVAHMECYGAPLDTSKAVDSEGILGYIKAVGCLYAITGDAMYLDRMREAFA 572

Query: 528 YEFTFKFAYNSPVKVPPLSTVGWSSCGGSVTSVANPHIHPMSSNLVDELYYFVQQRKDPY 587
           YE +F+F +NSPV VPPL+ VGWSSCGGSVTS +N HIHPMSS  ++++ Y+++ R D Y
Sbjct: 573 YECSFRFCWNSPVGVPPLNEVGWSSCGGSVTSTSNAHIHPMSSVAIEDMVYYLRYRNDTY 632

Query: 588 VWQRMLDTIGWGCQTYNRYDREFDHGKKGWMSERYCHSEGLLTETYSDGSPASTWFCLMP 647
           +  R+ D +GW CQTYN  D E+ +G+ GWMSER+CH +G L E Y DGS  STW CLMP
Sbjct: 633 IASRLCDAVGWSCQTYNLKDGEYGYGRVGWMSERFCHCQGFLDERYPDGSLCSTWRCLMP 692

Query: 648 WASGSIIEGLVGDYWEA 664
           WA+G+I++GL G YW+ 
Sbjct: 693 WAAGAILDGLTGLYWDV 709


>A6DQY3.1 A6DQY3_9BACT Putative uncharacterized protein
          Length = 660

 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 128/603 (21%), Positives = 228/603 (37%), Gaps = 63/603 (10%)

Query: 62  GGATWSGVIHVELPFAKANPRFFLPAFMYARNCGEAPQNVPNEFPRLREGSPSRPSSPW- 120
           G   +SG + +       +P F LP        G   Q++   +P++       P   W 
Sbjct: 31  GKDGFSGRVSLVKELNITSPWFMLPGIF----SGLGRQDLIKVYPQI--CLDPDPKDIWQ 84

Query: 121 ---WMVRSDRLSHPAALVYDNGKIFGLCASPYFISREGDKTQWKPELAGEFYQYSGYTCS 177
              W    +R++ P A V++  K +   +  ++   +G     + + A   + +S +   
Sbjct: 85  QNHWSFALERMALPMAGVHNGNKWYIWQSDTHYQLTQGVLRGAQDKEAQVGFGFS-WQKD 143

Query: 178 LAKGTVGYTLGYENAPLLFIKSRLVKERAPLDENCFELAASESVEFTLDLYEYEAESE-- 235
           L K  V   +     P   ++S L  ER P      EL    S  F++DL  +E E +  
Sbjct: 144 LVKLQV--NIPAVEGPTRHVRSPLTDERLPY----LELEPGGS--FSIDLQWHELEGQRY 195

Query: 236 --LGINAAIEEIYSRYHQPPRPGSDLRTAAADLSQAIYQYAWLPEERNY--STFVYE--- 288
               I   +EE    ++ P     +    A   +  +  + W  E  +   + F+Y    
Sbjct: 196 DFAQIQRQVEEEIRPHNLPADFVIEPEEYAEIANDGLKDWHWQEEAEDGRPAYFIYTAAM 255

Query: 289 DKETG-GYRYNKIISISW-------TDGLPVAXXXXXXXXLRD----EPMRCQALSCIQN 336
           D+       YNK  ++ W         G P+A         +     +P     ++    
Sbjct: 256 DRSVEFNANYNKGTTLCWHFDSLGFVGGFPIAYGLLSRIKRQKISLCDPWSQDLINYTDR 315

Query: 337 IAENSLNPASGLPYEAYQNGKW-SINGWWFDGMRTPGHSAYLCAQALFYI---MKAYEFE 392
           +A  +  P  GL Y +Y  GK  + NG + +G    G+++    +   +      A    
Sbjct: 316 LATKAFAPC-GLFYTSYHPGKGRNQNGEYENGPEQDGYTSCWLPEGQLHARTEADALWHL 374

Query: 393 KRLHNILHGD------WMVFXXXXXXXXXXSKNSDDEYPSILSERTGAGLEYDSFSGT-W 445
            R+ N+L G       W              +  D  +P I S  TG    +D   G  W
Sbjct: 375 ARIINLLDGQIPQIKSWKKTCIKVLKAVLKVQREDGRHPQIYSAETGEAYSFDGDGGLLW 434

Query: 446 CMAAMAYYSWLTG---DSTHLDSLKRSEKHYYEAYVRRMECYGAPLDADKAVDSEGILAY 502
             A +    W      +   L+S++R+   Y E       C GAP D   +  SE     
Sbjct: 435 VPAMLEVTKWCADQDFNQILLNSVRRAGAAYQEKVHDWWVC-GAPEDVGNSPTSEDAGNA 493

Query: 503 IKAVRYLHALTGDALYLDHMRDAIGYEFTFKFAYNSPVKVPP---LSTVGWSSCGGSVTS 559
           + A   L+ L G+  +L   + A  Y  T++ AYN  V+  P   L+   + + GG   S
Sbjct: 494 VLAYSRLYDLDGEK-WLKTWKIAADYMLTWRKAYN--VQFSPYNMLTQADFRTNGGDYAS 550

Query: 560 VANPHIHPMSSNLVDELYYFVQQRKDPYVWQRMLDTIGWGCQTYNRYDREFDHGKKGWMS 619
             N H+H    N + ++Y   +   DP+   R  D + +  Q   R   +++ G++G ++
Sbjct: 551 NHNNHLHGYEVNCISDMYKLSEVLNDPHYAMRAKDHLCFLLQLLCREPGQWN-GQRGMLT 609

Query: 620 ERY 622
           E++
Sbjct: 610 EQF 612


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 4,346,436,545
Number of extensions: 190751089
Number of successful extensions: 358910
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 358905
Number of HSP's successfully gapped: 2
Length of query: 667
Length of database: 3,060,696,203
Length adjustment: 143
Effective length of query: 524
Effective length of database: 1,713,491,058
Effective search space: 897869314392
Effective search space used: 897869314392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)