BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0014.p (285 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator 164 7e-39 B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein 153 2e-35 A5N5B0.1 A5N5B0_CLOK5 Transcriptional regulator 153 2e-35 C0C7S5.1 C0C7S5_9FIRM Putative uncharacterized protein 147 1e-33 C4ICK5.1 C4ICK5_CLOBU Transcriptional regulator, AraC family 142 2e-32 >C2CZA7.1 C2CZA7_LACBR AraC family transcriptional regulator Length = 278 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/276 (33%), Positives = 157/276 (56%), Gaps = 13/276 (4%) Query: 11 APIKEELICFHKAT---DTELINPALPYHRH-DAYEIYLFLRGNAYMYLEQSCYRLAPGD 66 I E+++C H + DT P+H+H + YE+YLFL GNA + S Y + G Sbjct: 10 GTINEDVVCAHNQSRYHDT-------PFHQHSNHYELYLFLAGNATFWTRASAYPMKRGY 62 Query: 67 LIIISPSEMHRCICIDNQMYERIGLNIKKSALQRLSSHRSNLLSCFESHPFGQNNLTRLS 126 L+ I HR + D+ +YERI LNI+ + ++ S+ ++L +CF+ + N+ +L+ Sbjct: 63 LVAIPNGHWHRAVTNDDSLYERIFLNIRTNLVKDFSTFDTDLSTCFKVDKSKEINILKLN 122 Query: 127 PDQIALYCGLADKLISCL-HSEAYGQDLLAESYVTQLLVFINSLYQSSTYKSNNLMPELV 185 ++ + L DKLI+ L A+G D+ ++ +L+ IN + + T + N++P L+ Sbjct: 123 ETDLSEFVSLCDKLIAVLDQPTAFGNDIRERILLSDILLLINQV-DNITNQPQNIIPALL 181 Query: 186 SNTMTYIKEHLVESISSEQLEQEFHYSGKYISQQFREHTGLTIRSYIVDKRISLAMNHLS 245 N + +I +L +S + Q F+ + Y+++ F+ + GL+I YI + RI+ A L Sbjct: 182 QNMIRFIDTNLANDLSLSAISQHFYLNQSYLNRYFKRYMGLSIHKYISESRINQAKILLK 241 Query: 246 AGKTVAEACELSGFSDYANFIRSFKKIAGMPPGKYK 281 AGK+V +AC GF +Y+NFIR+F + G+ PGKYK Sbjct: 242 AGKSVTDACNQCGFGNYSNFIRAFTRYVGISPGKYK 277 >B9DYV8.1 B9DYV8_CLOK1 Putative uncharacterized protein Length = 286 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 147/252 (58%), Gaps = 4/252 (1%) Query: 32 ALPYHRHDAYEIYLFLRGNAYMYLEQSCYRLAPGDLIIISPSEMHRCICIDNQMYERIGL 91 + +H H+ +I +F+ GN +E Y+L P D+++I+ +++H+ I +++YERI + Sbjct: 30 SFEFHYHNFDKIVIFIGGNVTYLIEGKSYKLKPWDILLINNNDIHKAIIDPDKIYERIIM 89 Query: 92 NIKKSALQRLSSHRSNLLSCFESHPFGQNNLTRLSPDQIALYCGLADKLISCLHSEAYGQ 151 I L R +++ NLLSCFE NL RL + I + + + S+ G Sbjct: 90 WINLDFLIRYNNN-CNLLSCFELASKQGFNLLRLEDNWIDIIKKILFDIKDTFKSKDLGY 148 Query: 152 DLLAESYVTQLLVFINSLY--QSSTYKSNNL-MPELVSNTMTYIKEHLVESISSEQLEQE 208 + L S + Q +V+IN L+ Q +T + ++ E +++ + YI HL +++S + L E Sbjct: 149 ETLRISLLLQFIVYINRLFLKQKNTKELYDIKYDERINDILNYINGHLDQNLSIDFLSSE 208 Query: 209 FHYSGKYISQQFREHTGLTIRSYIVDKRISLAMNHLSAGKTVAEACELSGFSDYANFIRS 268 F+ S Y+ +F+E TG TI +YI+ KR+ ++ + GK +AEAC SGF DY+NFIR+ Sbjct: 209 FYVSKYYLMHKFKEQTGYTIHAYILQKRLIMSNLLIKNGKNIAEACVQSGFGDYSNFIRA 268 Query: 269 FKKIAGMPPGKY 280 FKK+ G+ P KY Sbjct: 269 FKKMFGVSPNKY 280 >A5N5B0.1 A5N5B0_CLOK5 Transcriptional regulator Length = 286 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 147/252 (58%), Gaps = 4/252 (1%) Query: 32 ALPYHRHDAYEIYLFLRGNAYMYLEQSCYRLAPGDLIIISPSEMHRCICIDNQMYERIGL 91 + +H H+ +I +F+ GN +E Y+L P D+++I+ +++H+ I +++YERI + Sbjct: 30 SFEFHYHNFDKIVIFIGGNVTYLIEGKSYKLKPWDILLINNNDIHKAIIDPDKIYERIIM 89 Query: 92 NIKKSALQRLSSHRSNLLSCFESHPFGQNNLTRLSPDQIALYCGLADKLISCLHSEAYGQ 151 I L R +++ NLLSCFE NL RL + I + + + S+ G Sbjct: 90 WINLDFLIRYNNN-CNLLSCFELASKQGFNLLRLEDNWIDIIKKILFDIKDTFKSKDLGY 148 Query: 152 DLLAESYVTQLLVFINSLY--QSSTYKSNNL-MPELVSNTMTYIKEHLVESISSEQLEQE 208 + L S + Q +V+IN L+ Q +T + ++ E +++ + YI HL +++S + L E Sbjct: 149 ETLRISLLLQFIVYINRLFLKQKNTKELYDIKYDERINDILNYINGHLDQNLSIDFLSSE 208 Query: 209 FHYSGKYISQQFREHTGLTIRSYIVDKRISLAMNHLSAGKTVAEACELSGFSDYANFIRS 268 F+ S Y+ +F+E TG TI +YI+ KR+ ++ + GK +AEAC SGF DY+NFIR+ Sbjct: 209 FYVSKYYLMHKFKEQTGYTIHAYILQKRLIMSNLLIKNGKNIAEACVQSGFGDYSNFIRA 268 Query: 269 FKKIAGMPPGKY 280 FKK+ G+ P KY Sbjct: 269 FKKMFGVSPNKY 280 >C0C7S5.1 C0C7S5_9FIRM Putative uncharacterized protein Length = 275 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 2/247 (0%) Query: 36 HRHDAYEIYLFLRGNAYMYLEQSCYRLAPGDLIIISPSEMHRC-ICIDNQMYERIGLNIK 94 H HD YE+YL LRG +E YR+ PGD ++ SP E+H+ I D YER L I Sbjct: 22 HHHDFYEVYLLLRGRVEYIVENHIYRMRPGDWMLTSPLELHQARIVTDVDAYERFVLWIA 81 Query: 95 KSALQRLSSHRSNLLSCFESHPFGQNNLTRLSPDQIALYCGLADKLISCLHSEAYGQDLL 154 + L+ LS+ R++L CF++ NL RL A D+L + S+ YG DLL Sbjct: 82 RPYLEHLSTPRTSLTRCFDTSVANHTNLLRLPGAAGAQMRASIDRLCTLRTSKEYGSDLL 141 Query: 155 AESYVTQLLVFIN-SLYQSSTYKSNNLMPELVSNTMTYIKEHLVESISSEQLEQEFHYSG 213 A+ + L++ +N + + + ++V + YI EH E+++ +QL ++F S Sbjct: 142 AQGALVDLMIGLNRAAAERGDARPMGSSDQVVDAVLHYINEHYSETLTLDQLAEKFFISK 201 Query: 214 KYISQQFREHTGLTIRSYIVDKRISLAMNHLSAGKTVAEACELSGFSDYANFIRSFKKIA 273 ++ ++F G T+ YI+ KR+ A L+ G E C+ GF DYANF R+FK Sbjct: 202 YHLLRKFDAQVGTTVHRYILQKRLLNAKQLLAGGVPPNEVCQYCGFGDYANFYRAFKAEY 261 Query: 274 GMPPGKY 280 P +Y Sbjct: 262 NQTPRQY 268 >C4ICK5.1 C4ICK5_CLOBU Transcriptional regulator, AraC family Length = 284 Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 135/255 (52%), Gaps = 13/255 (5%) Query: 32 ALPYHRHDAYEIYLFLRGNAYMYLEQSCYRLAPGDLIIISPSEMHRCICIDNQMYERIGL 91 + H HD YEIY + G ++ Y + PGDL +I+ E H I ++ERI + Sbjct: 31 TMKIHIHDCYEIYYSISGGKQFLIDNKFYDINPGDLFVINQFESHYVSQISQMIHERIVI 90 Query: 92 NIKKSALQRLSSHRSNLLSCFESHPFGQNNLTRLSPDQIALYCGLADKLISCLHSEAYGQ 151 +I L+++SS +++L CF + L +Q + +K+ +C E +G Sbjct: 91 SIHPDFLKQISSTKTDLNYCFTHRDNNFIHKISLDKEQQNRFMYFINKIAAC---EGFGS 147 Query: 152 DLLAESYVTQLLVFINSLY------QSSTYKSNNLMPELVSNTMTYIKEHLVESISSEQL 205 D++ + +L+ I +Y SS YK NN + E++ YI +++ E++S E L Sbjct: 148 DMIEHATFIELITSITKIYVDNKDLSSSQYKYNNQIQEIIR----YINDNISENMSIEHL 203 Query: 206 EQEFHYSGKYISQQFREHTGLTIRSYIVDKRISLAMNHLSAGKTVAEACELSGFSDYANF 265 + F S YI + F+ TG TI YI +RIS+A + LS G ++ + C GF+DY+NF Sbjct: 204 SEHFFLSESYICRIFKLSTGTTINKYITARRISMAKSMLSNGMSINDVCSNCGFNDYSNF 263 Query: 266 IRSFKKIAGMPPGKY 280 ++SFKK G+ P KY Sbjct: 264 LKSFKKAVGVSPKKY 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,626,308,998 Number of extensions: 62504934 Number of successful extensions: 175343 Number of sequences better than 1.0e-05: 1136 Number of HSP's gapped: 178903 Number of HSP's successfully gapped: 1136 Length of query: 285 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 151 Effective length of database: 1,798,280,193 Effective search space: 271540309143 Effective search space used: 271540309143 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)