BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0012.p (398 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P70733.1 P70733_AERPU Endo-xylanase 656 0.0 O24852.1 O24852_AERPU Xylanase D 629 e-178 B3KF38.1 B3KF38_9BACI Endo-xylanase-like protein 622 e-176 Q45070.1 XYNC1_BACSU Glucuronoxylanase xynC EC=3.2.1.136 619 e-175 Q6YK37.2 XYNC2_BACSU Glucuronoxylanase xynC EC=3.2.1.136 608 e-172 >P70733.1 P70733_AERPU Endo-xylanase Length = 528 Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/389 (80%), Positives = 337/389 (86%), Gaps = 2/389 (0%) Query: 9 PAWIGDLTAAQRETAFGNGPNQLGFSVLRIYVDDNKNNWYREVETAKSAIAHGAIVFASP 68 PAWIGDLTAAQRETAFGNGPNQLGFS+LRIYVD+N+NNWYREV TAK AI GA+VFASP Sbjct: 52 PAWIGDLTAAQRETAFGNGPNQLGFSILRIYVDENRNNWYREVATAKRAIEQGALVFASP 111 Query: 69 WNPPSSMTETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMKNNGVNLYAISVQNEPDYA 128 WNPPS M ETFNRNGDT+AKRLRYDKYAAYAQHLNDFVTYMK+NGVNLYAISVQNEPDYA Sbjct: 112 WNPPSDMVETFNRNGDTNAKRLRYDKYAAYAQHLNDFVTYMKDNGVNLYAISVQNEPDYA 171 Query: 129 HTWTWWTPAEMLNFMKNNAGSI-NCRVIAPESFSYMKNMSDPILNDTQALANMDILGAHT 187 H WTWWTP EML FMK NAGSI N +V+APESF Y+KNMSDPILND QALANMDILGAHT Sbjct: 172 HEWTWWTPQEMLRFMKENAGSIQNTKVMAPESFQYLKNMSDPILNDPQALANMDILGAHT 231 Query: 188 YGTSFSNFPYPLFKQKGAGKELWMTEVYYPNSDNNSANRWPEALDVAYHMHNAMAEADFQ 247 YGT F +F YPLFKQKGAGKELWMTEVYYPNSDNNS++RWPEALDV+YHMHNAM E DFQ Sbjct: 232 YGTQFKDFAYPLFKQKGAGKELWMTEVYYPNSDNNSSDRWPEALDVSYHMHNAMVEGDFQ 291 Query: 248 AYVWWYIRRQYGPMNEDGTISKRGDSMAQFSKFIRPGYVRVDATKNPNTNVYTSAYKGDN 307 AYVWWYIRRQYGPMNEDG+ISKRG +MA FSKF+RPGY RVDATKNP+TN SAYKGDN Sbjct: 292 AYVWWYIRRQYGPMNEDGSISKRGYNMAHFSKFVRPGYYRVDATKNPDTNTSVSAYKGDN 351 Query: 308 KVVIVAINRGTSAVSQNFVLQNGTASSVSTWITDASRKXXXXXXXXXXXXXFTAQLPAQS 367 K VIVAINRGTSAVSQ FVLQNG AS+VS+W+TD+SR FTAQLPAQS Sbjct: 352 KAVIVAINRGTSAVSQKFVLQNGNASTVSSWVTDSSRNLASGAQITVSGGAFTAQLPAQS 411 Query: 368 VTTFVAALGNGRSTV-SETTYEAETSITV 395 VTTFVA + G T S TTYEAET T+ Sbjct: 412 VTTFVANITGGSVTPGSGTTYEAETGTTL 440 >O24852.1 O24852_AERPU Xylanase D Length = 564 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/392 (78%), Positives = 333/392 (84%), Gaps = 4/392 (1%) Query: 8 LPAWIGDLTAAQRETAFGNGPNQLGFSVLRIYVDDNKNNWYREVETAKSAIAHGAIVFAS 67 LPAWIGDLT AQRETAFGN NQLGFS+LRIYVD + NNWYREV TAK AI GAIVFAS Sbjct: 56 LPAWIGDLTPAQRETAFGNDQNQLGFSILRIYVDPDSNNWYREVATAKRAIEKGAIVFAS 115 Query: 68 PWNPPSSMTETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMKNNGVNLYAISVQNEPDY 127 PWNPPSSM ETFNRNGDT+AKRL+YDKYAAYAQHLNDFVTYMKNNGV+LYAISVQNEPDY Sbjct: 116 PWNPPSSMVETFNRNGDTNAKRLKYDKYAAYAQHLNDFVTYMKNNGVDLYAISVQNEPDY 175 Query: 128 AHTWTWWTPAEMLNFMKNNAGSIN-CRVIAPESFSYMKNMSDPILNDTQALANMDILGAH 186 AH WTWWTP E+L FMK NAGSI +V+APESF Y+KN+SDPILND QALANMDILGAH Sbjct: 176 AHDWTWWTPQEILRFMKENAGSIQGTKVMAPESFQYLKNISDPILNDPQALANMDILGAH 235 Query: 187 TYGTSFSNFPYPLFKQKGAGKELWMTEVYYPNSDNNSANRWPEALDVAYHMHNAMAEADF 246 TYGT SNF YPLFKQKGAGKELWMTEVY PNSDNNSA+RWPEAL+V+YHMHNAM E DF Sbjct: 236 TYGTQISNFAYPLFKQKGAGKELWMTEVYVPNSDNNSADRWPEALEVSYHMHNAMVEGDF 295 Query: 247 QAYVWWYIRRQYGPMNEDGTISKRGDSMAQFSKFIRPGYVRVDATKNPNTNVYTSAYKGD 306 QAYVWWYIRRQYGPM EDGTISKRG +MA FSKF+RPGY+RVDATKNP+TN + SAYKGD Sbjct: 296 QAYVWWYIRRQYGPMKEDGTISKRGYNMAHFSKFVRPGYLRVDATKNPDTNTFVSAYKGD 355 Query: 307 NKVVIVAINRGTSAVSQNFVLQNGTASSVSTWITDASRKXXXXXXXXXXXXXFTAQLPAQ 366 NKVV+VAINRGTSA SQ FVLQNG AS+VS+++TD+SR FTAQLPAQ Sbjct: 356 NKVVVVAINRGTSATSQRFVLQNGNASTVSSYVTDSSRNLASLAPINVSNGAFTAQLPAQ 415 Query: 367 SVTTFVAAL---GNGRSTVSETTYEAETSITV 395 SVTTFVA L G + + TTYEAET T+ Sbjct: 416 SVTTFVADLTGGNGGGNVGTGTTYEAETGTTL 447 >B3KF38.1 B3KF38_9BACI Endo-xylanase-like protein Length = 426 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 294/368 (79%), Positives = 315/368 (85%) Query: 9 PAWIGDLTAAQRETAFGNGPNQLGFSVLRIYVDDNKNNWYREVETAKSAIAHGAIVFASP 68 PAWIGDLTAAQRETAFGNG NQLGFS+LRIYV +++N WYRE++TAK AIA GAIVFASP Sbjct: 58 PAWIGDLTAAQRETAFGNGNNQLGFSILRIYVHEDRNQWYRELDTAKRAIALGAIVFASP 117 Query: 69 WNPPSSMTETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMKNNGVNLYAISVQNEPDYA 128 WNPP+ M ETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYM+NNGVNLYAISVQNEPDYA Sbjct: 118 WNPPADMVETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMRNNGVNLYAISVQNEPDYA 177 Query: 129 HTWTWWTPAEMLNFMKNNAGSINCRVIAPESFSYMKNMSDPILNDTQALANMDILGAHTY 188 H WTWWTP EML FMK NAGSIN RVIAPESF Y+KNMSDPILND QALANMDILGAH Y Sbjct: 178 HDWTWWTPQEMLRFMKENAGSINSRVIAPESFQYLKNMSDPILNDPQALANMDILGAHLY 237 Query: 189 GTSFSNFPYPLFKQKGAGKELWMTEVYYPNSDNNSANRWPEALDVAYHMHNAMAEADFQA 248 GT SNF YPLFKQKGAGK+LWMTEVYYPNSDNNSA+RWPEALDV+YH+HNAM E DFQA Sbjct: 238 GTQVSNFAYPLFKQKGAGKDLWMTEVYYPNSDNNSADRWPEALDVSYHIHNAMVEGDFQA 297 Query: 249 YVWWYIRRQYGPMNEDGTISKRGDSMAQFSKFIRPGYVRVDATKNPNTNVYTSAYKGDNK 308 YVWWYIRR YGPM EDGTIS RG +MA FS+F+RPGYVRVDA+KNP TNVY SAYKGDNK Sbjct: 298 YVWWYIRRSYGPMKEDGTISNRGYNMAHFSRFVRPGYVRVDASKNPETNVYVSAYKGDNK 357 Query: 309 VVIVAINRGTSAVSQNFVLQNGTASSVSTWITDASRKXXXXXXXXXXXXXFTAQLPAQSV 368 +VIVAINR S V+QNFVLQNG+ S VS WIT +S F A LPAQSV Sbjct: 358 IVIVAINRNNSGVNQNFVLQNGSVSQVSRWITSSSSNLQPGTSLNVTGSNFWAHLPAQSV 417 Query: 369 TTFVAALG 376 TTFV LG Sbjct: 418 TTFVGELG 425 >Q45070.1 XYNC1_BACSU Glucuronoxylanase xynC EC=3.2.1.136 Length = 422 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 289/365 (79%), Positives = 315/365 (86%) Query: 9 PAWIGDLTAAQRETAFGNGPNQLGFSVLRIYVDDNKNNWYREVETAKSAIAHGAIVFASP 68 PAW GDLTAAQRETAFGNG NQLGFS+LRI+VD+N+NNWY+EVETAKSA+ HGAIVFASP Sbjct: 56 PAWAGDLTAAQRETAFGNGQNQLGFSILRIHVDENRNNWYKEVETAKSAVKHGAIVFASP 115 Query: 69 WNPPSSMTETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMKNNGVNLYAISVQNEPDYA 128 WNPPS M ETFNRNGDTSAKRL+Y+KYAAYAQHLNDFVT+MKNNGVNLYAISVQNEPDYA Sbjct: 116 WNPPSDMVETFNRNGDTSAKRLKYNKYAAYAQHLNDFVTFMKNNGVNLYAISVQNEPDYA 175 Query: 129 HTWTWWTPAEMLNFMKNNAGSINCRVIAPESFSYMKNMSDPILNDTQALANMDILGAHTY 188 H WTWWTP E+L FM+ NAGSIN RVIAPESF Y+KN+SDPILND QALANMDILG H Y Sbjct: 176 HEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNLSDPILNDPQALANMDILGTHLY 235 Query: 189 GTSFSNFPYPLFKQKGAGKELWMTEVYYPNSDNNSANRWPEALDVAYHMHNAMAEADFQA 248 GT S FPYPLFKQKGAGK+LWMTEVYYPNSD NSA+RWPEALDV+ H+HNAM E DFQA Sbjct: 236 GTQVSQFPYPLFKQKGAGKDLWMTEVYYPNSDTNSADRWPEALDVSQHIHNAMVEGDFQA 295 Query: 249 YVWWYIRRQYGPMNEDGTISKRGDSMAQFSKFIRPGYVRVDATKNPNTNVYTSAYKGDNK 308 YVWWYIRR YGPM EDGTISKRG +MA FSKF+RPGYVR+DATKNPN NVY SAYKGDNK Sbjct: 296 YVWWYIRRSYGPMKEDGTISKRGYNMAHFSKFVRPGYVRIDATKNPNANVYVSAYKGDNK 355 Query: 309 VVIVAINRGTSAVSQNFVLQNGTASSVSTWITDASRKXXXXXXXXXXXXXFTAQLPAQSV 368 VVIVAIN+ + V+QNFVLQNG+AS+VS WIT +S F A LPAQSV Sbjct: 356 VVIVAINKSNTGVNQNFVLQNGSASNVSRWITSSSSNLQPGTNLTVSGNHFWAHLPAQSV 415 Query: 369 TTFVA 373 TTFV Sbjct: 416 TTFVV 420 >Q6YK37.2 XYNC2_BACSU Glucuronoxylanase xynC EC=3.2.1.136 Length = 423 Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 285/365 (78%), Positives = 309/365 (84%) Query: 9 PAWIGDLTAAQRETAFGNGPNQLGFSVLRIYVDDNKNNWYREVETAKSAIAHGAIVFASP 68 PAWIGDLTAAQRETAFGNG NQLGFSVLRI+VD+N+NNWY+EVETAKSAI HGAIVFASP Sbjct: 57 PAWIGDLTAAQRETAFGNGQNQLGFSVLRIHVDENRNNWYKEVETAKSAIKHGAIVFASP 116 Query: 69 WNPPSSMTETFNRNGDTSAKRLRYDKYAAYAQHLNDFVTYMKNNGVNLYAISVQNEPDYA 128 WNPP+ M ETFN NGDTSAKRLRYDKYAAYAQHLNDFV +MK+NGVNLYAIS+QNEPDYA Sbjct: 117 WNPPNDMVETFNHNGDTSAKRLRYDKYAAYAQHLNDFVNFMKSNGVNLYAISMQNEPDYA 176 Query: 129 HTWTWWTPAEMLNFMKNNAGSINCRVIAPESFSYMKNMSDPILNDTQALANMDILGAHTY 188 H WTWWTP E+L FM+ NAGSIN RVIAPESF Y+KN+SDPILND QAL NMDILG H Y Sbjct: 177 HEWTWWTPQEILRFMRENAGSINARVIAPESFQYLKNISDPILNDPQALRNMDILGTHLY 236 Query: 189 GTSFSNFPYPLFKQKGAGKELWMTEVYYPNSDNNSANRWPEALDVAYHMHNAMAEADFQA 248 GT S FPYPLFKQKG GKELWMTEVYYPNSDNNSA+RWPEAL V+ H+H++M E DFQA Sbjct: 237 GTQVSQFPYPLFKQKGGGKELWMTEVYYPNSDNNSADRWPEALGVSEHIHHSMVEGDFQA 296 Query: 249 YVWWYIRRQYGPMNEDGTISKRGDSMAQFSKFIRPGYVRVDATKNPNTNVYTSAYKGDNK 308 YVWWYIRR YGPM EDG ISKRG +MA FSKF+RPGYVR+DATKNP NVY SAYKGDNK Sbjct: 297 YVWWYIRRSYGPMKEDGMISKRGYNMAHFSKFVRPGYVRIDATKNPEPNVYVSAYKGDNK 356 Query: 309 VVIVAINRGTSAVSQNFVLQNGTASSVSTWITDASRKXXXXXXXXXXXXXFTAQLPAQSV 368 VVIVAIN+ + V+QNFVLQNGTAS VS WIT +S F A LPAQSV Sbjct: 357 VVIVAINKNNTGVNQNFVLQNGTASQVSRWITSSSSNLQPGTDLKVTDNHFWAHLPAQSV 416 Query: 369 TTFVA 373 TTFV Sbjct: 417 TTFVV 421 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.128 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,343,279,876 Number of extensions: 96156344 Number of successful extensions: 210047 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 209935 Number of HSP's successfully gapped: 83 Length of query: 398 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 260 Effective length of database: 1,760,596,133 Effective search space: 457754994580 Effective search space used: 457754994580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)