BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0009.p (607 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9QDR6.2 A9QDR6_9BACL UgpB 742 0.0 B3K842.1 B3K842_9BACI Extracellular solute-binding protein family 1 565 e-159 Q9KB24.1 Q9KB24_BACHD BH2111 protein 558 e-157 B8I4I4.1 B8I4I4_CLOCE Extracellular solute-binding protein family 1 369 e-100 B1D4M7.1 B1D4M7_9BACL Extracellular solute-binding protein family 1 356 4e-96 >A9QDR6.2 A9QDR6_9BACL UgpB Length = 570 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/543 (66%), Positives = 428/543 (78%), Gaps = 5/543 (0%) Query: 68 SNTSDGAS-NSPAAKGNSASGSGD-TSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGV 125 SN + G S NS A NSAS D +PVT+ Y+SF +K L S+T IGKELQ+QTGV Sbjct: 30 SNANSGKSGNSGNAASNSASPEADDKTPVTFSYYSFTS-QKDALASDTVIGKELQQQTGV 88 Query: 126 DWNIEYLVGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRV 185 DW +E+LVGD TK+GVMIASGDYPD+I G++ KL+DAGAFIPLDDLIEKYGPNIKRV Sbjct: 89 DWKMEFLVGDPQTKSGVMIASGDYPDVIVPEGEIDKLLDAGAFIPLDDLIEKYGPNIKRV 148 Query: 186 YGPYYEKFRQKDGKLYFFPYGANIGYLSEPNFQTG-FYIQRSVLKEFNYPKITTLDEYFD 244 YGPY++KFRQ DGK+YF P+GAN GY+ +P G F+IQRSVLKE YPKI TLD+YFD Sbjct: 149 YGPYFDKFRQADGKMYFLPFGANQGYIGDPGISQGAFWIQRSVLKEAGYPKIKTLDQYFD 208 Query: 245 LIKQYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKL 304 LIKQY+EKHPQVDGKDTIGFA+ AG SFF++ NP+MHLAG PNDG +VDM THEAK Sbjct: 209 LIKQYQEKHPQVDGKDTIGFASLAGPADSFFSITNPSMHLAGYPNDGDVIVDMNTHEAKT 268 Query: 305 VAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNN 364 A ++ +K+W+QKLNE NA+GL DPE+FT N+DQ+LAKLTSGRVLGYF+Y+WQVGDATNN Sbjct: 269 YAATDIEKKWLQKLNEVNAEGLFDPETFTANKDQFLAKLTSGRVLGYFNYAWQVGDATNN 328 Query: 365 LKKAGDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLKE 424 LKKAG D+KRY LPIVFD+ KDQY+DPP FVNN G+GI+VKAKD VRIIKYFDNLLKE Sbjct: 329 LKKAGIDEKRYAPLPIVFDENTKDQYVDPPSFVNNRGIGISVKAKDAVRIIKYFDNLLKE 388 Query: 425 ENQILVQWGIKDQSYAVDENGRFTYANDEQRQIHEDPEKSMKFGFDYFNYSWPRYGNSSV 484 ENQ+LVQWG+KDQ+Y VD NGR+ + +Q DPEK G+ YF YSWPRYGN+SV Sbjct: 389 ENQVLVQWGVKDQNYTVDANGRYV-MDAQQIADRNDPEKKRTVGWQYFEYSWPRYGNNSV 447 Query: 485 LQDGNAYGPGSQPEVATFGYTGGDKQLLAAYGVKTFSELFSNPDERPWFPAWSIALEQGS 544 L DGN+YG G+QPEVA GYT GDK LL AYGVKTFSE FS PD+R W+PAWSI QG+ Sbjct: 448 LADGNSYGVGNQPEVAYAGYTDGDKALLDAYGVKTFSEYFSKPDDRSWYPAWSINKGQGT 507 Query: 545 PEQMFITKADDLQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRVA 604 PEQ+F KA DLQ+ +P ++L P+ F W DY Q KLD K YE F+TK VQDR+A Sbjct: 508 PEQIFQQKAGDLQKKFVPKLVLAKPSEFDSIWSDYTGQMGKLDVKGYETFVTKVVQDRIA 567 Query: 605 GKW 607 GKW Sbjct: 568 GKW 570 >B3K842.1 B3K842_9BACI Extracellular solute-binding protein family 1 Length = 561 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 289/541 (53%), Positives = 367/541 (67%), Gaps = 15/541 (2%) Query: 70 TSDGASNSPAAKGNSASGSGDTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVDWNI 129 + + A N+PAA G VT+ YF+ K + +ETTIGK + QTGV++ + Sbjct: 25 SKEAADNTPAAGGEGEKKE---EKVTFTYFNAAAGKDKNT-NETTIGKIFEDQTGVNFKM 80 Query: 130 EYLVGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRVYGPY 189 E+LVGD +TK G IAS DYPD+I + KL+ AGAFIPL+DLI+KYGPNIKRVY PY Sbjct: 81 EHLVGDENTKVGTFIASNDYPDVIVPGSSIDKLVGAGAFIPLNDLIDKYGPNIKRVYEPY 140 Query: 190 YEKFRQKDGKLYFFPYGANIG-YLSEPNFQTG-FYIQRSVLKEFNYPKITTLDEYFDLIK 247 Y + +DG +YF P A +G Y S PN + G F+IQR VLKE YPKI T DEY LI+ Sbjct: 141 YNLMKAEDGNIYFLPLSAVVGEYTSAPNIEQGAFWIQRRVLKEAGYPKIKTFDEYLALIR 200 Query: 248 QYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKLVAG 307 Y +KHP+ + T Q FF L N MHLAG PNDGG ++DM+TH A A Sbjct: 201 DYVKKHPEEGLTGYLALTT----QDKFFALTNAPMHLAGYPNDGGIIIDMETHVANDYAD 256 Query: 308 SEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNNLK- 366 + KR++Q+LN+ NA+GL D SF N DQYLAKLTSG+VLG+F Y WQVG A NNL+ Sbjct: 257 DDITKRYLQELNKLNAEGLFDKSSFVDNYDQYLAKLTSGKVLGFFDYRWQVGQAMNNLRE 316 Query: 367 ---KAGDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLK 423 K+G+DD Y+ALPIV+D+ KDQY+DPP FVNN GVGI+V AKDP RI+KYF+NLL Sbjct: 317 TASKSGNDDLEYMALPIVYDENTKDQYLDPPSFVNNRGVGISVSAKDPERIVKYFNNLLT 376 Query: 424 EENQILVQWGIKDQSYAVDENGRFTYANDEQRQIHEDPEKSMKFGFDYFNYSWPRYGNSS 483 +ENQIL WGIKD++Y+VDENGRF Y +EQ FGF YF Y+WPRYGN S Sbjct: 377 DENQILSNWGIKDETYSVDENGRF-YRTEEQIAQTNTEAFRESFGFKYFEYNWPRYGNGS 435 Query: 484 VLQDGNAYGPGSQPEVATFGYTGGDKQLLAAYGVKTFSELFSNPDERPWFPAWSIALEQG 543 L DGN+ G G QPEVA Y+ DK LL AY + +FS+LF+ PD+RPW+PAWSI ++QG Sbjct: 436 TLPDGNSVGAGRQPEVAKMSYSEPDKTLLEAYDIDSFSQLFAAPDDRPWYPAWSIPIDQG 495 Query: 544 SPEQMFITKADDLQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRV 603 SP Q+F K DLQR + P ++L +PA F W++Y+ +F KLD K YED IT++V ++ Sbjct: 496 SPAQIFTQKKSDLQRKYFPKLVLASPAEFDGIWNEYVGEFGKLDVKGYEDLITEEVAKKI 555 Query: 604 A 604 A Sbjct: 556 A 556 >Q9KB24.1 Q9KB24_BACHD BH2111 protein Length = 561 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 273/543 (50%), Positives = 368/543 (67%), Gaps = 9/543 (1%) Query: 70 TSDGASNSPAAKGNSASGSG---DTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVD 126 ++D A+++ N+A+ + PVTY YF+ G K + +ET IGK L+++TGV+ Sbjct: 23 SNDAATDAHDQDENNATNDAVEVELEPVTYHYFNAGAAGKDLNTNETYIGKMLEEKTGVN 82 Query: 127 WNIEYLVGDGDTKAGVMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRVY 186 + +E+LVGD + + GVMIASGDYPD+I + L+DAGAFIPL+DL+E++GPN+ Y Sbjct: 83 FKVEHLVGDINQRTGVMIASGDYPDVIVPDAAIDALLDAGAFIPLNDLLEEHGPNLLEAY 142 Query: 187 GPYYEKFRQKDGKLYFFPYGANIG-YLSEPNFQTG-FYIQRSVLKEFNYPKITTLDEYFD 244 G Y F DG +Y+ P+GA + + PN G F+IQR +LKE+ +P+I TLDEY D Sbjct: 143 GDYLHMFTHDDGNIYYIPFGATVNEFQPNPNIDQGAFWIQRGILKEYGFPEINTLDEYLD 202 Query: 245 LIKQYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKL 304 +I +Y +++P++DG TI F + FF N HLAG PNDGG MVDM THEA + Sbjct: 203 IITRYAKENPEIDGMRTIPFTGLTYDW-RFFAFTNVPNHLAGYPNDGGVMVDMDTHEASV 261 Query: 305 VAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNN 364 A SEY KRW++ LNE NA+GL+D E F MN D+YL KL+SGRVLG+F Y WQ G A+N Sbjct: 262 YADSEYAKRWLKALNELNAEGLLDQEMFVMNYDEYLEKLSSGRVLGFFDYGWQFGTASNA 321 Query: 365 LKKAGDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLKE 424 L+ AG+ D+ Y+ALP+VFD+GIKDQYIDPP F N GVGITV A++P RII+++D L+KE Sbjct: 322 LRDAGNPDREYMALPVVFDEGIKDQYIDPPAFTGNRGVGITVNAENPERIIQFWDELIKE 381 Query: 425 ENQILVQWGIKDQSYAVDENGRFTYANDEQRQIHEDPEKSMKFGFDYFNYSWPRYGNSSV 484 +NQ LV WGI+ + Y VDENGRF Y +EQ +I + +FG F +SWPR + Sbjct: 382 DNQRLVMWGIEGEHYNVDENGRF-YQTEEQIEIVNNQNFRDEFGMTTFEWSWPRI--NGT 438 Query: 485 LQDGNAYGPGSQPEVATFGYTGGDKQLLAAYGVKTFSELFSNPDERPWFPAWSIALEQGS 544 DGNA QPEVA Y DK+ L AYG+ TF+ELFS PDERPW+PAWS +EQGS Sbjct: 439 FSDGNAVEARRQPEVAFASYNDDDKEYLEAYGISTFAELFSEPDERPWYPAWSANIEQGS 498 Query: 545 PEQMFITKADDLQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRVA 604 P+Q+F +AD++ R H ++L PA+F K WDD++ + LD YE+F T+ VQ RV Sbjct: 499 PQQIFEERADEILRRHYARIVLADPADFDKEWDDFVQAYRSLDVDAYENFFTEVVQARVR 558 Query: 605 GKW 607 G+W Sbjct: 559 GEW 561 >B8I4I4.1 B8I4I4_CLOCE Extracellular solute-binding protein family 1 Length = 567 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/506 (42%), Positives = 295/506 (58%), Gaps = 10/506 (1%) Query: 107 QVLGSETTIGKELQKQTGVDWNIEYLVGDGDTKAGVMIASGDYPDIID-SSGQMAKLMDA 165 Q + I K+++++ GV N E+LVGD + K GVMIA G+YPD++ S ++K A Sbjct: 66 QAPTPDNKIYKKIKEELGVTCNFEFLVGDKNQKIGVMIAGGEYPDVVTVGSDTVSKFTGA 125 Query: 166 GAFIPLDDLIEKYGPNIKRVYGPYYEKFRQ-KDGKLYFFP-YGANIGYLS-EPNFQTGFY 222 GA +PL+D+IEK PN+K+ + P+ K + +DG Y P YG S N F+ Sbjct: 126 GALVPLEDIIEKSAPNLKKHFDPFKNKVKDVEDGHFYAMPGYGVYYNDFSINVNEGPAFF 185 Query: 223 IQRSVLKEFNYPKITTLDEYFDLIKQYKEKHPQVDGKDTIGFATFAGEQGSFFTLQNPAM 282 IQ++VLK+ YPK+ TLD+YFDLI++YK K+P +DG+ TIGF + E F L+NP Sbjct: 186 IQKAVLKDAGYPKVKTLDQYFDLIEKYKAKNPTIDGQPTIGFEILS-EGWRDFCLKNPPQ 244 Query: 283 HLAGSPNDGGTMVDMKTHEAKLVAGSEYQKRWIQKLNEANAQGLVDPESFTMNRDQYLAK 342 HL G PNDGG +V+ +T+ A+ +Y KR+ +K+NE NA+GL+DPE+FTMN DQY+AK Sbjct: 245 HLIGHPNDGGVVVNSETNTAEFFWDKDYAKRYYKKINEINAKGLLDPETFTMNFDQYIAK 304 Query: 343 LTSGRVLGYFSYSWQVGDATNNLKKAGDDDKRYVALPIVFDKGIKDQYIDPPGFVNNYGV 402 L+SGRVLG F W +A LK ++ Y LP+VFD+ +D Y+D P N G Sbjct: 305 LSSGRVLGMFDQHWNFNNAELTLKTQKKFERTYAPLPLVFDEDTRDYYMDRPVLNVNTGY 364 Query: 403 GITVKAKDPVRIIKYFDNLLKEENQILVQWGIKDQSYAVDENGRFTYANDEQRQIHEDPE 462 IT AK+P RI+K+FD LL EE Q ++ WGIKD+ Y V ++G F Y EQR + D Sbjct: 365 AITKSAKNPERIVKFFDALLTEEWQTILGWGIKDEDYKVGDDGMF-YMTPEQRVNYNDQT 423 Query: 463 KSMKFGFDYFNYSWPRYGNSSVLQDGNAYGPGSQPEVATFGYTGGDKQLLAAYGVKTFSE 522 + Y P+ DGNA GPG QP+ DK AYG S+ Sbjct: 424 WRLANMAHTLWYYAPKM--EGTFSDGNATGPGGQPKEYYDALDQYDKDFFKAYGYDQQSD 481 Query: 523 LFS-NPDERPWFPAWSIALEQGSPEQMFITKADDLQRNHLPSMILDTPANFSKNWDDYMN 581 FS P+ R +PAW I L GSP M TK D+ +LP IL P F WD+Y+N Sbjct: 482 FFSPAPENRISYPAWQIDLVDGSPASMANTKVGDIATKYLPKAILAKPDKFDSVWDEYVN 541 Query: 582 QFNKLDKKTYEDFITKKVQDRVAGKW 607 Q +K D + Y D I +++ R A W Sbjct: 542 QLHKEDIQAYVDRINDQLKWR-AENW 566 >B1D4M7.1 B1D4M7_9BACL Extracellular solute-binding protein family 1 Length = 573 Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 214/528 (40%), Positives = 304/528 (57%), Gaps = 17/528 (3%) Query: 82 GNSASGSGDTSPVTYKYFSFGGPKKQVLGSETTIGKELQKQTGVDWNIEYLVGDGDTKAG 141 GNS + + D + + +F G Q S+ + K++++ G+ + E+LVGD + K G Sbjct: 51 GNSGTNAADEALKPVEISAFIGAPGQSPTSDNKLFKKIKEDLGITFKTEFLVGDLEQKLG 110 Query: 142 VMIASGDYPDIIDSSGQMAKLMDAGAFIPLDDLIEKYGPNIKRVYGPYYEKFRQ-KDGKL 200 VMIA GDYPD+I + KL+ AGA IPL+DLIE+Y P +K Y Y+ + + DG + Sbjct: 111 VMIAGGDYPDLITAD---PKLVSAGAVIPLEDLIEQYAPKLKEHYAKYWNRMKDPSDGHI 167 Query: 201 YFFP-YGANIGYLSEPNFQTG--FYIQRSVLKEFNYPKITTLDEYFDLIKQYKEKHPQVD 257 Y+ P YGA G ++E F +G F+IQ++VLKEF YPK+ TLD+Y LI++Y+ K+P++D Sbjct: 168 YWLPNYGAYQGNVNE-TFYSGPAFWIQKAVLKEFGYPKLQTLDDYMKLIREYQAKYPEID 226 Query: 258 GKDTIGFATFAGEQGSFFTLQNPAMHLAGSPNDGGTMVDMKTHEAKLVAGSEYQKRWIQK 317 G+ TIGF T A + +F L P HL G PNDGG +VD A + A + K + ++ Sbjct: 227 GQKTIGFTTLASDWRTFGLLNAPE-HLTGHPNDGGVVVDNGV--ASVFATQDISKTYYKE 283 Query: 318 LNEANAQGLVDPESFTMNRDQYLAKLTSGRVLGYFSYSWQVGDATNNLKKAGDDDKRYVA 377 LN +GL+D E+FT N DQYLAKLT G VLG F W A ++L G D+ YV Sbjct: 284 LNGLYNEGLMDKEAFTQNYDQYLAKLTQGNVLGMFDQHWNFQTAEDSLNTQGKSDRTYVG 343 Query: 378 LPIVFDKGIKDQYIDPPGFVNNYGVGITVKAKDPVRIIKYFDNLLKEENQILVQWGIKDQ 437 P+V+D IKD Y D N G GI+V AKDP RII+ + L+ E+ Q + WG + Sbjct: 344 FPLVYDASIKDYYRDRAVINLNNGFGISVDAKDPKRIIQALEQLMDEKYQKMFTWGEEGV 403 Query: 438 SYAVDENGRFTYANDEQRQIHEDPE-KSMKFGFDYFNYSWPRYGNSSVLQDGNAYGPGSQ 496 Y V +G++T EQR+ +EDP K G F Y P+ L DGNA PG Sbjct: 404 DYQVGTDGKYT-RTPEQRKNYEDPAWKLANLGDGIFGY-LPKI--EGTLSDGNATSPGGD 459 Query: 497 PEVATFGYTGGDKQLLAAYGVKTFSELFSNPDERP-WFPAWSIALEQGSPEQMFITKADD 555 P DK++L AYG KT++E F+ P + P ++PAW I L GS + K D Sbjct: 460 PVEFYDSLKDVDKEVLNAYGHKTWTEFFTQPPDNPVYYPAWQIDLIDGSDASIANKKMTD 519 Query: 556 LQRNHLPSMILDTPANFSKNWDDYMNQFNKLDKKTYEDFITKKVQDRV 603 LP I+ P F K W DY++++ K++ K YED I +++Q R+ Sbjct: 520 ASLKFLPRAIMSKPDQFDKVWQDYVDEYKKINVKAYEDRINEQIQWRI 567 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,001,938,135 Number of extensions: 187646593 Number of successful extensions: 429243 Number of sequences better than 1.0e-05: 208 Number of HSP's gapped: 428942 Number of HSP's successfully gapped: 208 Length of query: 607 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 465 Effective length of database: 1,722,912,073 Effective search space: 801154113945 Effective search space used: 801154113945 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)