BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0008.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9QDR7.1 A9QDR7_9BACL LplB 405 e-111 B3K841.1 B3K841_9BACI Binding-protein-dependent transport system... 399 e-109 Q9KB23.1 Q9KB23_BACHD Transmembrane lipoprotein 360 7e-98 B3K5B2.1 B3K5B2_9BACI Binding-protein-dependent transport system... 335 3e-90 B1D4M6.1 B1D4M6_9BACL Binding-protein-dependent transport system... 327 6e-88 >A9QDR7.1 A9QDR7_9BACL LplB Length = 323 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/304 (63%), Positives = 232/304 (76%) Query: 2 NQTHLFFKRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLK 61 ++ LFFK+L+QQK L FM +PFV+W F+FKY+PLWGWT++FQ ++PA+ +QEW G K Sbjct: 20 SRLQLFFKKLLQQKVLVFMSMPFVLWLFLFKYVPLWGWTISFQKFRPAKDLFDQEWVGWK 79 Query: 62 HFRILFEDSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPH 121 +F LF D +FYRVLRNT+VMS+I LVLGFV RVVQT+SYLPH Sbjct: 80 NFNFLFNDDSFYRVLRNTIVMSSINLVLGFVTAIVLAILLNELRQIMFKRVVQTISYLPH 139 Query: 122 FISWVVASSIVLTVLSPDGIINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWN 181 FISWVVA++I+ + L+P+GI+N W+GKGNYFWGILG ++VWK+VGWN Sbjct: 140 FISWVVAANIISSALAPEGIVNILLTRMHLIDQPILWLGKGNYFWGILGASEVWKNVGWN 199 Query: 182 TIIYLAAITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEP 241 TIIYLAAIT+IDPSQYEAAEIDGA+R QR+L+ITLPGLK V ESGFEP Sbjct: 200 TIIYLAAITTIDPSQYEAAEIDGANRLQRILHITLPGLKSVIVILLIMNLGNILESGFEP 259 Query: 242 QYLLGNGMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGE 301 QYLLGNGM ++YSENLDIFVLKYG+ MGN+SL TAAG+FKTVVSFIFL SAN IAKR+GE Sbjct: 260 QYLLGNGMTVDYSENLDIFVLKYGMNMGNYSLATAAGMFKTVVSFIFLLSANSIAKRLGE 319 Query: 302 SRLF 305 SRLF Sbjct: 320 SRLF 323 >B3K841.1 B3K841_9BACI Binding-protein-dependent transport systems inner membrane component Length = 346 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/300 (65%), Positives = 226/300 (75%), Gaps = 1/300 (0%) Query: 7 FFKRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRIL 66 FF++L+QQK L FM IPF+IW FVFKY+PLWGWT+AFQ++KPA+ +QEW GL+HF L Sbjct: 47 FFRKLLQQKALVFMSIPFLIWLFVFKYMPLWGWTIAFQDFKPAKKIFDQEWVGLQHFTFL 106 Query: 67 FEDSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWV 126 F+D F RV+RNTL MS I LVLGFV RVVQT+SYLPHFISWV Sbjct: 107 FQDEHFLRVMRNTLAMSFINLVLGFVTAIVLAILLNELRNLMFKRVVQTISYLPHFISWV 166 Query: 127 VASSIVLTVLSPDG-IINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIY 185 VA+SI+ T LS DG IIN W+G+G YFWGILGV++VWK+VGWNTIIY Sbjct: 167 VAASIISTALSADGGIINELLMWFGIIKEPILWLGEGEYFWGILGVSEVWKNVGWNTIIY 226 Query: 186 LAAITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLL 245 LAA+T IDPSQYEAAEIDGA RFQR+ NITLPGLKPV ESGFEPQYLL Sbjct: 227 LAAMTMIDPSQYEAAEIDGAGRFQRIWNITLPGLKPVFIILLIMNIGNLLESGFEPQYLL 286 Query: 246 GNGMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRLF 305 GNGMN++YSENLDIFVLKYG+ MGNFSL AAG+FKTVVSFI LF+ANHIAKR+GE RLF Sbjct: 287 GNGMNVDYSENLDIFVLKYGIQMGNFSLSIAAGMFKTVVSFILLFTANHIAKRLGEDRLF 346 >Q9KB23.1 Q9KB23_BACHD Transmembrane lipoprotein Length = 337 Score = 360 bits (925), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 176/302 (58%), Positives = 214/302 (70%), Gaps = 1/302 (0%) Query: 5 HLFFKRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFR 64 LFFK+ +QK L M +PF+IW +F+Y+PL+GW++AFQ+++PAR +Q+WAG KHF Sbjct: 36 KLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFT 95 Query: 65 ILFEDSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFIS 124 LF D F+ VLRNTL MS I LVLGFV RVVQT+SY+PHF+S Sbjct: 96 FLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLS 155 Query: 125 WVVASSIVLTVLS-PDGIINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTI 183 WVVA+ +V LS +GIIN W+G G YFWGI+G + VWK+VGWNTI Sbjct: 156 WVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTI 215 Query: 184 IYLAAITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQY 243 IYLAAIT ID QYEAAEIDGA+R QR+ ITLPG++PV ESGFE QY Sbjct: 216 IYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQY 275 Query: 244 LLGNGMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESR 303 LL N MN++++ENLDIFVL+YG+ MGNFSL TAAGIFKTVVSFIFLFSANHIAKR+GE+R Sbjct: 276 LLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGEAR 335 Query: 304 LF 305 LF Sbjct: 336 LF 337 >B3K5B2.1 B3K5B2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 154/295 (52%), Positives = 202/295 (68%) Query: 11 LIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILFEDS 70 L +Q+ L +M +P + + +F Y+P+WGWTMAFQ+YKPAR +SEQ+W G KHF LF+D Sbjct: 25 LKEQRQLIYMSVPLMAYIILFAYVPIWGWTMAFQDYKPARDFSEQKWVGFKHFEFLFKDD 84 Query: 71 TFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVVASS 130 +F +VLRNTL MS I ++LGF R VQT+SYLPHF+SW++ + Sbjct: 85 SFLQVLRNTLAMSVINMILGFTTAIILALLLNEIRKVFWKRTVQTISYLPHFLSWIIVTG 144 Query: 131 IVLTVLSPDGIINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYLAAIT 190 IV T L+ DGIIN W+ +G YFWGI+G + VWK+VGWNTIIYLAA+ Sbjct: 145 IVATSLASDGIINDILMKLHLIKEPIQWLSEGKYFWGIVGASHVWKEVGWNTIIYLAAMA 204 Query: 191 SIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLGNGMN 250 SIDP+ YEAA++DGASR+++M ++TLPG+KP E+GFE QYLLGNG+ Sbjct: 205 SIDPALYEAADMDGASRYRKMFHVTLPGIKPTIIILLIMQVGHILEAGFEVQYLLGNGLV 264 Query: 251 LEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRLF 305 +++S+ +DIFVLKYGL GN+SL TAAGIFKTVVS L AN +AKR+GE RL Sbjct: 265 VDWSQTIDIFVLKYGLAQGNYSLATAAGIFKTVVSVTLLLIANGVAKRLGEERLL 319 >B1D4M6.1 B1D4M6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 320 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 161/297 (54%), Positives = 200/297 (67%), Gaps = 1/297 (0%) Query: 9 KRLIQQKTLAFMCIPFVIWAFVFKYLPLWGWTMAFQNYKPARSYSEQEWAGLKHFRILFE 68 KR Q L +M +P +I+ +F Y P+WGWTMAFQNYKPA+S+ EQEW GLK F+ LF Sbjct: 23 KRFKNQGQLMWMSLPVLIYVMLFSYYPIWGWTMAFQNYKPAKSFGEQEWVGLKQFKFLFT 82 Query: 69 DSTFYRVLRNTLVMSTIQLVLGFVXXXXXXXXXXXXXXXXXXRVVQTVSYLPHFISWVVA 128 D +F RVLRNT+ MS I +VLGFV R +QT+SYLPHF+SW++ Sbjct: 83 DDSFLRVLRNTIGMSAINMVLGFVTAIIFAILLNEVKNKLFKRSIQTISYLPHFLSWIIV 142 Query: 129 SSIVLTVLSPDG-IINXXXXXXXXXXXXXXWMGKGNYFWGILGVTQVWKDVGWNTIIYLA 187 + IV T LS DG I+N W+ + YFWGI+G + VWK+VGWN IIYLA Sbjct: 143 TGIVATSLSVDGGIVNEVLMKLGIIHEPIMWLSEPKYFWGIVGASHVWKEVGWNAIIYLA 202 Query: 188 AITSIDPSQYEAAEIDGASRFQRMLNITLPGLKPVXXXXXXXXXXXXXESGFEPQYLLGN 247 AITSIDPS YEAAEIDGA+R+ +M ITLPG+K + E+GFE QYLLGN Sbjct: 203 AITSIDPSLYEAAEIDGANRYHKMWYITLPGIKSIVIILLIMNLGWILEAGFEVQYLLGN 262 Query: 248 GMNLEYSENLDIFVLKYGLGMGNFSLGTAAGIFKTVVSFIFLFSANHIAKRMGESRL 304 G+ +++SE +DIFVLKYGL GN+SL TAAGIFKTVVS +++AN IAKR GE RL Sbjct: 263 GVVVDWSETIDIFVLKYGLKQGNYSLATAAGIFKTVVSITLIYAANTIAKRFGEERL 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,523,761,224 Number of extensions: 53648638 Number of successful extensions: 150508 Number of sequences better than 1.0e-05: 2362 Number of HSP's gapped: 148568 Number of HSP's successfully gapped: 2363 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)