BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0007.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9QDR8.1 A9QDR8_9BACL UgpE 466 e-129 B3K840.1 B3K840_9BACI Binding-protein-dependent transport system... 425 e-117 Q9KB22.1 Q9KB22_BACHD ABC transporter (Permease) 385 e-105 A4XGB0.1 A4XGB0_CALS8 Binding-protein-dependent transport system... 354 5e-96 B9MP61.1 B9MP61_ANATD Binding-protein-dependent transport system... 354 7e-96 >A9QDR8.1 A9QDR8_9BACL UgpE Length = 306 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 218/303 (71%), Positives = 267/303 (88%), Gaps = 2/303 (0%) Query: 5 KASRLRNSSLGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMW 64 +++ R SSL D+IFD NI+FM+ ++ VT+YPF+NM A+S NDAND++RGGIY WPRMW Sbjct: 4 SSAKARYSSLPDKIFDTSNIVFMLLVVTVTLYPFLNMFALSFNDANDSIRGGIYAWPRMW 63 Query: 65 TLNNYKYIFGESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVF 124 T +NY YIF E+ IYHATLIS LRT+ GT SVFCTAMLA+T+SRQEFVLRKFVTL +F Sbjct: 64 TWDNYSYIFNEASIYHATLISALRTIAGTITSVFCTAMLAYTISRQEFVLRKFVTLVAIF 123 Query: 125 TMYFSGGLIPGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDG 184 TMYFSGGLIPGYLLI+ L + +SFWVYI+PG+IGVFNMIVIRSFIEGLP+GI+ESA+IDG Sbjct: 124 TMYFSGGLIPGYLLIKELHMINSFWVYIIPGIIGVFNMIVIRSFIEGLPDGIMESAKIDG 183 Query: 185 AGEFTTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQT 244 AGEF TF+R+VLPLT+PA+ATVSLFVAV QWNSWFDVFLYNSS++ LSTLQYELMKILQT Sbjct: 184 AGEFITFMRIVLPLTVPALATVSLFVAVSQWNSWFDVFLYNSSHLNLSTLQYELMKILQT 243 Query: 245 TNTSATA-GAVEAYQSAENTV-RVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGG 302 +NT+A++ A + + + ++ V VTPTS+RATMTI+AS+PI++VYPFLQ+YFV+GMTVGG Sbjct: 244 SNTAASSTNAGDQFAAGQSGVTAVTPTSIRATMTIVASLPIILVYPFLQKYFVKGMTVGG 303 Query: 303 VKG 305 VKG Sbjct: 304 VKG 306 >B3K840.1 B3K840_9BACI Binding-protein-dependent transport systems inner membrane component Length = 311 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 208/308 (67%), Positives = 254/308 (82%), Gaps = 3/308 (0%) Query: 1 MQSGKASRLRNSSLGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLW 60 + + R S DR+FD NI+FM+CLMIVT+YPFIN +AVS N+A D+V+GGIYLW Sbjct: 4 ISDAPRAHARFKSPADRLFDTFNIVFMICLMIVTLYPFINTLAVSFNNATDSVKGGIYLW 63 Query: 61 PRMWTLNNYKYIFGESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTL 120 PR +T NYKY+F E+ I+HAT IS+LRT++GT SVFC AM+A+T+SR E+VLRKFV++ Sbjct: 64 PRDFTWENYKYVFNEATIFHATFISVLRTLIGTVTSVFCCAMVAYTISRPEYVLRKFVSI 123 Query: 121 FFVFTMYFSGGLIPGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESA 180 F+ TMYFSGGLIP +LLIR LG+ +F VYI+PG+IGVFN+IVIRSFIEGLPEGILESA Sbjct: 124 AFILTMYFSGGLIPNFLLIRELGMLGTFSVYIIPGLIGVFNVIVIRSFIEGLPEGILESA 183 Query: 181 RIDGAGEFTTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMK 240 RIDGAGEFTTF+++VLPL +P +ATVSLF AV QWNSWFDVFLYNSS +LSTLQYELMK Sbjct: 184 RIDGAGEFTTFLKIVLPLCVPVLATVSLFTAVSQWNSWFDVFLYNSSYGELSTLQYELMK 243 Query: 241 ILQTTNTSATAGAVEAYQ---SAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQG 297 ILQ +N+S +G A Q S +VTPTS+RATMTI+ASVPI++VYPFLQ+YFVQG Sbjct: 244 ILQNSNSSLNSGNDYASQFASSESGANQVTPTSIRATMTIVASVPIILVYPFLQKYFVQG 303 Query: 298 MTVGGVKG 305 MT+GGVKG Sbjct: 304 MTLGGVKG 311 >Q9KB22.1 Q9KB22_BACHD ABC transporter (Permease) Length = 308 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/312 (61%), Positives = 239/312 (76%), Gaps = 23/312 (7%) Query: 6 ASRLRNSSLGDRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWT 65 A + R + D IFD NIIFM+ L +V +YP +N +AVSLNDA D VRGGIY WPR +T Sbjct: 8 AGKRRGAD--DFIFDSLNIIFMLLLCVVMLYPMVNTLAVSLNDATDTVRGGIYFWPREFT 65 Query: 66 LNNYKYIFGESDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFT 125 N++++F +S + HA +IS+LRTV+GTA+SVFCTAM+A+T+SR++FVL+KFVT+ FV T Sbjct: 66 WYNFEHVFSQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAFVLT 125 Query: 126 MYFSGGLIPGYLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGA 185 MY +GGLIP YLL+R L L +FW+YI+PG+IGVFN+IVIRSFIEGLPE I ESA+IDGA Sbjct: 126 MYLNGGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKIDGA 185 Query: 186 GEFTTFIRVVLPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQT- 244 GEFT F ++ LPL +P +ATVSLFVAVGQWNSWFDVF+YNS+ +LSTLQYELMKILQ Sbjct: 186 GEFTQFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKILQNS 245 Query: 245 -----------TNTSATAGAVEAYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRY 293 S+ +G VE VTP S+RA MTII SVPI+ VYPFLQ+Y Sbjct: 246 NASMSSGSAASAFASSQSGVVET---------VTPQSVRAAMTIIVSVPIICVYPFLQKY 296 Query: 294 FVQGMTVGGVKG 305 FV+G+T+GGVKG Sbjct: 297 FVKGLTLGGVKG 308 >A4XGB0.1 A4XGB0_CALS8 Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 354 bits (909), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 162/289 (56%), Positives = 224/289 (77%), Gaps = 1/289 (0%) Query: 16 DRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNNYKYIFGE 75 D I DI M+ +MI T+YPF N++A+SLNDA D++RGGIYLWPR +TLNNY+ I Sbjct: 12 DLIIDIVVYTVMIIVMIATLYPFWNILAISLNDALDSIRGGIYLWPRKFTLNNYRVILSN 71 Query: 76 SDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYFSGGLIPG 135 DIYHATLIS+LR V+G+ +V M+A+ +SR++++ RKF++ VFTMYFSGGLIP Sbjct: 72 PDIYHATLISVLRAVIGSITNVLSCLMVAYGISRKDYIFRKFISRVIVFTMYFSGGLIPT 131 Query: 136 YLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGAGEFTTFIRVV 195 YLL++NL L +FWVYI+PG++ FN+IVIRS+I+GLP+ ++ESA+IDGA E+ +++ Sbjct: 132 YLLMKNLHLVGTFWVYILPGMVSAFNIIVIRSYIDGLPQSLIESAKIDGASEYRILFQII 191 Query: 196 LPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNTSATAGAVE 255 +PL +P +ATV+L+VAVGQWN+WFD FLYNS +LSTLQ+EL KILQ+ +++T Sbjct: 192 MPLCLPVLATVTLWVAVGQWNAWFDTFLYNSGKPELSTLQFELQKILQSVQSASTNPDFS 251 Query: 256 AYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGVK 304 A ++ VTPT++RATMTI+A+VPIL VYPFLQRYF+ G+T+G +K Sbjct: 252 ASLTSSGRT-VTPTAIRATMTIVATVPILFVYPFLQRYFIHGLTIGSIK 299 >B9MP61.1 B9MP61_ANATD Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 354 bits (908), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 161/289 (55%), Positives = 224/289 (77%), Gaps = 1/289 (0%) Query: 16 DRIFDICNIIFMVCLMIVTMYPFINMIAVSLNDANDAVRGGIYLWPRMWTLNNYKYIFGE 75 D + DI M+ +MI T+YPF N++A+SLNDA D++RGGIYLWPR +TLNNY+ I Sbjct: 12 DLVIDIVVYTVMIIVMIATLYPFWNILAISLNDALDSIRGGIYLWPRKFTLNNYRVILSN 71 Query: 76 SDIYHATLISLLRTVMGTAVSVFCTAMLAFTVSRQEFVLRKFVTLFFVFTMYFSGGLIPG 135 DIYHATLIS+LR V+G+ +V M+A+ +SR++++ RKF++ VFTMYFSGGLIP Sbjct: 72 PDIYHATLISVLRAVIGSLTNVLSCLMVAYGISRKDYIFRKFISRVIVFTMYFSGGLIPT 131 Query: 136 YLLIRNLGLTDSFWVYIVPGVIGVFNMIVIRSFIEGLPEGILESARIDGAGEFTTFIRVV 195 YLL++NL L +FWVYI+PG++ FN+IVIRS+I+GLP+ ++ESA+IDGA E+ +++ Sbjct: 132 YLLMKNLHLVGTFWVYILPGMVSAFNIIVIRSYIDGLPQSLIESAKIDGASEYRILFQII 191 Query: 196 LPLTIPAMATVSLFVAVGQWNSWFDVFLYNSSNIKLSTLQYELMKILQTTNTSATAGAVE 255 +PL +P +ATV+L+VAVGQWNSWFD FLYNS +LSTLQ+EL KILQ+ +++T Sbjct: 192 IPLCLPVLATVTLWVAVGQWNSWFDTFLYNSGKPELSTLQFELQKILQSVQSASTNPDFS 251 Query: 256 AYQSAENTVRVTPTSLRATMTIIASVPILMVYPFLQRYFVQGMTVGGVK 304 A ++ VTPT++RATMTI+A++PIL VYPFLQRYF+ G+T+G +K Sbjct: 252 ASLTSSGRT-VTPTAIRATMTIVATLPILFVYPFLQRYFIHGLTIGSIK 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.140 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,628,671,722 Number of extensions: 62318469 Number of successful extensions: 267229 Number of sequences better than 1.0e-05: 5550 Number of HSP's gapped: 260621 Number of HSP's successfully gapped: 5551 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)