BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0417.0005.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAU4.1 B1DAU4_9BACL Transcriptional regulator, AraC family 379 e-103 A9U7B6.1 A9U7B6_PHYPA Predicted protein 299 2e-79 B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein 129 2e-28 A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein 121 7e-26 B1D6C1.1 B1D6C1_9BACL Transcriptional regulator, AraC family 102 3e-20 >B1DAU4.1 B1DAU4_9BACL Transcriptional regulator, AraC family Length = 263 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 175/250 (70%), Positives = 209/250 (83%), Gaps = 3/250 (1%) Query: 1 MAHIHYAESNTTHAGNFVIDVPVGYH-WLLVITKTPAQFWVNGGLKEYPAHSAILYRPLQ 59 M HIHY S+ H GNFV D+P G+H WLLVITKTPAQFWVNG L++YP+ SA+LYR Q Sbjct: 1 MNHIHYVGSDAAHDGNFVFDIPQGHHCWLLVITKTPAQFWVNGDLQKYPSQSAVLYRAHQ 60 Query: 60 KVYYRACTDRFINDWVRFESDEPYISESPLPLGVPFALSDPDFCHKLFELLVIEHHFNRD 119 K+YY+AC DR++NDW+RFESDEPY+S +P G+PF+L DPD+CHKL ELLVIEH+FNRD Sbjct: 61 KIYYKACADRYVNDWIRFESDEPYVSN--IPFGIPFSLDDPDYCHKLIELLVIEHNFNRD 118 Query: 120 CKESSIDYLLRTLFNKLWESYFHDDITPQYYKLLKLRTVIQNNPGEYWTVSKMADSLGIS 179 K+SSID LLRTLFNKL ESY HD T QYY LL+LR IQN+P ++WTV KMA+ + IS Sbjct: 119 YKKSSIDCLLRTLFNKLLESYCHDGFTTQYYDLLRLRAAIQNSPDDHWTVPKMAEYVRIS 178 Query: 180 PGYLQNIYKKTFGISCMDDVINSRIRMAKEYLIHNAQSIAEVASRCGYQNVEHFCRQFKK 239 PGYLQ IYKKTFGISCM+DVIN RIR+AKEYL ++SI EVA RCGYQNVEHFCRQFK+ Sbjct: 179 PGYLQTIYKKTFGISCMEDVINCRIRLAKEYLFQGSRSIHEVADRCGYQNVEHFCRQFKQ 238 Query: 240 LTGYTPRNFQ 249 +TG++PRNF+ Sbjct: 239 VTGFSPRNFR 248 >A9U7B6.1 A9U7B6_PHYPA Predicted protein Length = 258 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 133/248 (53%), Positives = 182/248 (73%), Gaps = 1/248 (0%) Query: 4 IHYAESNTTHAGNFVIDVPVGYH-WLLVITKTPAQFWVNGGLKEYPAHSAILYRPLQKVY 62 I+Y + H G+F+ D+P G+ WLL++T+TPA+FWV G ++EYPA+ A+L+ P QK+ Sbjct: 5 IYYVGYDAAHPGDFIYDIPAGHDFWLLILTQTPAEFWVQGEIREYPANCAVLFPPRQKIM 64 Query: 63 YRACTDRFINDWVRFESDEPYISESPLPLGVPFALSDPDFCHKLFELLVIEHHFNRDCKE 122 YRAC+ +F+NDWVRFE+DE Y+ E+ LP GVP + DP +C +LF+LL E+ F+ D +E Sbjct: 65 YRACSGQFVNDWVRFETDESYVLETTLPRGVPIPMPDPGYCRQLFQLLATENFFSCDYRE 124 Query: 123 SSIDYLLRTLFNKLWESYFHDDITPQYYKLLKLRTVIQNNPGEYWTVSKMADSLGISPGY 182 SIDYL R LFNKL E++ + +P Y KLL LR I N PG W+V MAD + +SPGY Sbjct: 125 LSIDYLFRILFNKLLEAFQSKENSPHYQKLLNLRKAIHNRPGAEWSVPSMADDVHLSPGY 184 Query: 183 LQNIYKKTFGISCMDDVINSRIRMAKEYLIHNAQSIAEVASRCGYQNVEHFCRQFKKLTG 242 LQ +YK TFGISCMDDVI RIR+AKE LIH + IA+++ CGY+NVEHF RQF+++ G Sbjct: 185 LQTLYKATFGISCMDDVIQCRIRLAKERLIHGSLRIADISELCGYKNVEHFSRQFRRIVG 244 Query: 243 YTPRNFQK 250 TPR +++ Sbjct: 245 CTPREYRQ 252 >B0MQ29.1 B0MQ29_9FIRM Putative uncharacterized protein Length = 264 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 129/249 (51%), Gaps = 14/249 (5%) Query: 16 NFVIDVPVG-YHWLLVITKTPAQFWVNGGLKEYPAHSAILYRPLQKVYYRACTDRFINDW 74 NF++D P G LL++ KTPA F V G + +S IL P YY A + + +DW Sbjct: 18 NFIMDRPKGPGAVLLLLIKTPAVFKVGGVQYQVKENSFILMSPDTPCYYTAQENVYTDDW 77 Query: 75 VRFESDE---PYISESPLPLGVPFALSDPDFCHKLFELLVIEHHF----NRDCKESSIDY 127 V FE+D+ Y+ + +P+ +P L D D L +LV EH+ + + ++ ID Sbjct: 78 VYFENDDWDKEYVEKLGIPMDIPVYLGDMDELSHLVHILVYEHYSGAVNSEEIEKKYIDV 137 Query: 128 LL----RTLFNKLWESYFHDDITPQYYKLLKLRTVIQNNPGEYWTVSKMADSLGISPGYL 183 L RTL ++ S ++ ++Y+ ++RT+I P V +A G+S Sbjct: 138 LFLMLSRTLKSRNCMS--SKQLSERHYRFTQIRTMIFTMPDHVGNVDDLAAQAGMSRSGF 195 Query: 184 QNIYKKTFGISCMDDVINSRIRMAKEYLIHNAQSIAEVASRCGYQNVEHFCRQFKKLTGY 243 Q++YKK FG + + D+I R + AK L +I E+++RCGY N F RQFK+ G Sbjct: 196 QHLYKKLFGTTVIKDIIEGRTKRAKRLLSSTRLTIKEISTRCGYTNEYSFMRQFKEQVGK 255 Query: 244 TPRNFQKHI 252 TP ++ I Sbjct: 256 TPTEYRSSI 264 >A8STG6.1 A8STG6_9FIRM Putative uncharacterized protein Length = 264 Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 127/252 (50%), Gaps = 3/252 (1%) Query: 1 MAHIHYAESNTTHAGNFVIDVPVGY-HWLLVITKTPAQFWVNGGLKEYPAHSAILYRPLQ 59 M +I+ N H GNF I P G LLVI KT A NG S ILY Sbjct: 1 MININTVCQNVRHKGNFEICRPDGSGDDLLVIFKTSAVLIQNGEEITVSPDSLILYSKGT 60 Query: 60 KVYYRACTDRFINDWVRFESDEPYISESPLPLGVPFALSDPDFCHKLFELLVIEHHFNRD 119 +Y+ ++N +V F++D+ + + +D +L +L E+ + Sbjct: 61 MQHYKTLCGSYVNHFVHFDTDDTELMNG-IKTDTLITSADIPAIEELLTILCRENVADST 119 Query: 120 CKESSIDYLLRTLFNKLWESYFHDDITPQYYKLLK-LRTVIQNNPGEYWTVSKMADSLGI 178 ++ + L++ + K+ ES + D L+ LRT I +N G Y + ++A+ + + Sbjct: 120 NRKQYENMLMQMILMKISESSINPDSDKSRISALEMLRTDIYSNAGSYSNIYQLAEKMNL 179 Query: 179 SPGYLQNIYKKTFGISCMDDVINSRIRMAKEYLIHNAQSIAEVASRCGYQNVEHFCRQFK 238 SP YLQ IYK+ FGISC +D+++++I+ + YL ++ E++ CGY+N F + FK Sbjct: 180 SPSYLQAIYKRKFGISCYEDILSAKIKTGQYYLSTTDMTVKEISDLCGYENEICFMKIFK 239 Query: 239 KLTGYTPRNFQK 250 K TG TP ++K Sbjct: 240 KRTGITPSEYRK 251 >B1D6C1.1 B1D6C1_9BACL Transcriptional regulator, AraC family Length = 221 Score = 102 bits (255), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 105/209 (50%), Gaps = 8/209 (3%) Query: 51 SAILYRPLQKVYYRACTDRFINDW--VRFESDEPYISESPLPLGVPFALSDPDFCHK-LF 107 S IL++P Y F+NDW R E ++E PL P DP + + Sbjct: 14 SFILFQPDTPHSYMQFELPFVNDWFHCRGEELSGLLAELNFPLDTPVPAVDPMLISRSIM 73 Query: 108 ELLVIEH---HFNRDCKESSIDYLLRTLFNKLWESYFHDDITPQYYKLL-KLRTVIQNNP 163 EL ++ H ++ I LL L N L E H + +Y + +LR + N+P Sbjct: 74 ELHRVQKQGGHLRDQILDTDIRALLMKLSN-LHELSQHPERPGRYIRQFSELRDELYNSP 132 Query: 164 GEYWTVSKMADSLGISPGYLQNIYKKTFGISCMDDVINSRIRMAKEYLIHNAQSIAEVAS 223 + TV +AD + +S Y Q++YK FG S + D+IN R+ +AK L ++ S++ +A+ Sbjct: 133 QSHVTVEMLADRVHLSKSYFQHLYKDIFGCSVVTDMINGRLELAKYLLKNSTLSVSAIAA 192 Query: 224 RCGYQNVEHFCRQFKKLTGYTPRNFQKHI 252 CGY++ HF RQFKK G TP F+ + Sbjct: 193 SCGYEHETHFMRQFKKFVGLTPSQFKSRV 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,661,436,719 Number of extensions: 69370762 Number of successful extensions: 154588 Number of sequences better than 1.0e-05: 1421 Number of HSP's gapped: 156296 Number of HSP's successfully gapped: 1421 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)