BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0417.0001.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D6H8.1 B1D6H8_9BACL MMPL domain protein                              99   1e-19
A1SIP5.1 A1SIP5_NOCSJ MMPL domain protein                              68   2e-10
A4TGJ5.1 A4TGJ5_MYCGI MMPL domain protein                              57   4e-07
Q1B1I8.1 Q1B1I8_MYCSS MMPL                                             54   4e-06
A1UNL2.1 A1UNL2_MYCSK MMPL domain protein                              54   4e-06

>B1D6H8.1 B1D6H8_9BACL MMPL domain protein
          Length = 794

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%)

Query: 1   MANGVPVPGVMLSADGSIALFQFQFTVQQTSLPSSVPDNVIKAVTAVEQAGSGITAIPSD 60
           + +G PVPGVM+SADG++ALFQFQFTVQQ SLP  V DNV+ +VT VEQA  GI A+PSD
Sbjct: 158 IVDGNPVPGVMISADGNVALFQFQFTVQQMSLPQEVIDNVVASVTDVEQANLGIKALPSD 217

Query: 61  SLKSTPSIGSTEAGG 75
           +L   P+IG+TE  G
Sbjct: 218 TLVGKPAIGATEGIG 232


>A1SIP5.1 A1SIP5_NOCSJ MMPL domain protein
          Length = 784

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%), Gaps = 5/66 (7%)

Query: 1   MANGVPVPGVMLSADGSIALFQFQFTVQQTSLPSSVPDNVIKAVTAVEQA--GSGITAIP 58
           + +G PVPGV++S+DG +ALFQFQFTV  TSL     D+V   V  VE+A  G+G+T +P
Sbjct: 152 LVDGEPVPGVLVSSDGQVALFQFQFTVAATSLTD---DDVTSVVEVVERAEQGTGMTVLP 208

Query: 59  SDSLKS 64
           SDSLK+
Sbjct: 209 SDSLKA 214


>A4TGJ5.1 A4TGJ5_MYCGI MMPL domain protein
          Length = 787

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 3   NGVPVPGVMLSADGSIALFQFQFTVQQTSLPSSVPDNVIKAVTAVEQAGSGITAIPSDSL 62
           +G PVPGV +SADG  ALFQF F VQ   LP    ++VI AVT    AG  IT +PS ++
Sbjct: 150 DGAPVPGVSISADGRTALFQFAFDVQTFELPQGTIEHVI-AVTEDAVAGQDITVLPSAAM 208

Query: 63  KSTPSI 68
              P I
Sbjct: 209 FQIPEI 214


>Q1B1I8.1 Q1B1I8_MYCSS MMPL
          Length = 772

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 3   NGVPVPGVMLSADGSIALFQFQFTVQQTSLPSSVPDNVIKAVTAVEQAG-SGITAIPSDS 61
           +G PVPGV +SADG+ AL+QFQF  Q   LP+   +N I A  A E  G  GI  +PS S
Sbjct: 151 DGQPVPGVTVSADGAAALYQFQFDKQTAELPTGAVENTIDA--AREAVGDRGIEVLPSAS 208

Query: 62  LKSTPS-IGSTEAGG 75
           +   P  +G+ E  G
Sbjct: 209 MAQMPEMVGAGEVIG 223


>A1UNL2.1 A1UNL2_MYCSK MMPL domain protein
          Length = 772

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 3   NGVPVPGVMLSADGSIALFQFQFTVQQTSLPSSVPDNVIKAVTAVEQAG-SGITAIPSDS 61
           +G PVPGV +SADG+ AL+QFQF  Q   LP+   +N I A  A E  G  GI  +PS S
Sbjct: 151 DGQPVPGVTVSADGAAALYQFQFDKQTAELPTGAVENTIDA--AREAVGDRGIEVLPSAS 208

Query: 62  LKSTPS-IGSTEAGG 75
           +   P  +G+ E  G
Sbjct: 209 MAQMPEMVGAGEVIG 223


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.124    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 434,165,261
Number of extensions: 12943986
Number of successful extensions: 32861
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 32860
Number of HSP's successfully gapped: 7
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)