BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0006.p (437 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL15.1 B3KL15_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 585 e-165 C3IY21.1 C3IY21_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 584 e-165 B7Y654.1 B7Y654_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 584 e-165 Q5KWK9.1 GSA2_GEOKA Glutamate-1-semialdehyde 2,1-aminomutase 2 E... 584 e-165 A4IRG2.1 A4IRG2_GEOTN Glutamate-1-semialdehyde 2,1-aminotransferase 583 e-164 >B3KL15.1 B3KL15_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 431 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/424 (65%), Positives = 343/424 (80%), Gaps = 1/424 (0%) Query: 7 RMDSCSIAAFERAKRVIPGGVNSPVRAFSTVNLPPVFAARGQGAHLFDIDGNEFIDYIGS 66 R + S +AFE AK IPGGVNSPVRAF +V L P++ RG+G+ ++DIDGN FIDY+GS Sbjct: 6 RKEELSRSAFEEAKLYIPGGVNSPVRAFKSVGLTPIYIDRGEGSRVYDIDGNSFIDYVGS 65 Query: 67 WGPLILGHAHPEVVEAIREAAFQGTSFGLSTEIEIKMAEWICRSMPSIEMVRMVNSGTEA 126 WGPLI+GHAHPEVVEA++E A +GTSFG T +E KMA+ +C +PSIE+VRMVNSGTEA Sbjct: 66 WGPLIMGHAHPEVVEALQETAAKGTSFGAPTLLETKMAKLVCERVPSIEVVRMVNSGTEA 125 Query: 127 SMSALRLARGYTKRQKIVKFQGGYHGHADALLIKSGSGAATLGLPDSPGVPDSVAAHTLT 186 +MSA+RLARGYT R KI+KF+G YHGHAD+LLIK+GSG ATLGLPDSPGVP+SVA++T+ Sbjct: 126 TMSAIRLARGYTGRSKIIKFEGSYHGHADSLLIKAGSGIATLGLPDSPGVPESVASNTIA 185 Query: 187 APYNSMDSVRFLFEQYGEQIAAVIVEPVAGNMGVIPPVPGFLHGLREITKQYGSLLIFDE 246 PYN ++SV+ FE++GE+IAAVIVEPVAGNMGV+PP PGFL GLR++T YGS+LIFDE Sbjct: 186 VPYNDLESVQLAFERFGEEIAAVIVEPVAGNMGVVPPQPGFLEGLRKVTSDYGSILIFDE 245 Query: 247 VMTGYRVGFHGAQGLYGIDPDLTCLGKIIGGGLPVGAYGGKREIMEQVAPVGSIYQAGTL 306 VMTG+RV + AQG YG+ PDLTCLGK+IGGGLPVGAYGGKRE+M+Q+AP G IYQAGTL Sbjct: 246 VMTGFRVDLNCAQGRYGVTPDLTCLGKVIGGGLPVGAYGGKRELMDQIAPAGPIYQAGTL 305 Query: 307 SGNPLAMAAGYRTLRLLEGPGVYEELDRKAASLTEGFLQIAKLAGIPLKINRVGSMFSAF 366 SGNPLAMAAGY TL+LL P VYE+L+ + A L GF Q AK GIPL INR+GSM F Sbjct: 306 SGNPLAMAAGYTTLKLLT-PAVYEQLEERGARLQAGFEQSAKEFGIPLTINRIGSMVCPF 364 Query: 367 FSEQEVVDYDTAKRSNMQIFKAYYAAMLELGILTAPTPYEVNFVSTAHSDEDIERSISAY 426 F+ VV++DTAK S++ F+ Y+AAM++ G+ P+ +E F+S AH+ EDI+ +I A Sbjct: 365 FTNTPVVNFDTAKTSDLDRFRRYFAAMVQEGVSVPPSQFEGMFISAAHTVEDIDATIEAN 424 Query: 427 YQAL 430 Y A Sbjct: 425 YNAF 428 >C3IY21.1 C3IY21_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 430 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/422 (66%), Positives = 342/422 (81%), Gaps = 1/422 (0%) Query: 12 SIAAFERAKRVIPGGVNSPVRAFSTVNLPPVFAARGQGAHLFDIDGNEFIDYIGSWGPLI 71 S AA+E A +++PGGVNSPVRAF +V + P+F ARGQGA ++DIDGNE+IDY+ SWGPLI Sbjct: 8 SKAAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLI 67 Query: 72 LGHAHPEVVEAIREAAFQGTSFGLSTEIEIKMAEWICRSMPSIEMVRMVNSGTEASMSAL 131 LGHA+P+VVEA++ A QGTSFG T +E ++A+ + +PS+E+VRMVNSGTEA+MSAL Sbjct: 68 LGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSAL 127 Query: 132 RLARGYTKRQKIVKFQGGYHGHADALLIKSGSGAATLGLPDSPGVPDSVAAHTLTAPYNS 191 RLARGYTKR KI+KF+G YHGH D+LLIK+GSG ATLGLPDSPGVP+SVA HT+T PYN Sbjct: 128 RLARGYTKRNKIIKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVPESVAQHTITVPYND 187 Query: 192 MDSVRFLFEQYGEQIAAVIVEPVAGNMGVIPPVPGFLHGLREITKQYGSLLIFDEVMTGY 251 +DSVR+ FE++GE IAAVIVEPVAGNMGV+PPVPGFL GLR++TKQYG+LLIFDEVMTG+ Sbjct: 188 LDSVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLEGLRKVTKQYGALLIFDEVMTGF 247 Query: 252 RVGFHGAQGLYGIDPDLTCLGKIIGGGLPVGAYGGKREIMEQVAPVGSIYQAGTLSGNPL 311 RV +H AQG YGI+PDLTCLGK+IGGGLPVGAYGGK EIME VAP G +YQAGTLSGNPL Sbjct: 248 RVDYHCAQGYYGIEPDLTCLGKVIGGGLPVGAYGGKAEIMELVAPNGPVYQAGTLSGNPL 307 Query: 312 AMAAGYRTLRLLEGPGVYEELDRKAASLTEGFLQIAKLAGIPLKINRVGSMFSAFFSEQE 371 AM AGY TLR L P YEEL RKAA L +G Q A+ IP INR GSM FF+ + Sbjct: 308 AMTAGYETLRQLT-PETYEELGRKAARLADGLHQAAEKYDIPHTINRAGSMIGFFFTNEP 366 Query: 372 VVDYDTAKRSNMQIFKAYYAAMLELGILTAPTPYEVNFVSTAHSDEDIERSISAYYQALI 431 VV+Y+TAK S++++F AYY M GI P+ +E F+STAHSD+DIE +I+A + Sbjct: 367 VVNYETAKTSDLELFAAYYREMANEGIFLPPSQFEGLFLSTAHSDDDIEYTIAAAERVFA 426 Query: 432 RI 433 R+ Sbjct: 427 RL 428 >B7Y654.1 B7Y654_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 430 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/422 (66%), Positives = 342/422 (81%), Gaps = 1/422 (0%) Query: 12 SIAAFERAKRVIPGGVNSPVRAFSTVNLPPVFAARGQGAHLFDIDGNEFIDYIGSWGPLI 71 S AA+E A +++PGGVNSPVRAF +V + P+F ARGQGA ++DIDGNE+IDY+ SWGPLI Sbjct: 8 SKAAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLI 67 Query: 72 LGHAHPEVVEAIREAAFQGTSFGLSTEIEIKMAEWICRSMPSIEMVRMVNSGTEASMSAL 131 LGHA+P+VVEA++ A QGTSFG T +E ++A+ + +PS+E+VRMVNSGTEA+MSAL Sbjct: 68 LGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSAL 127 Query: 132 RLARGYTKRQKIVKFQGGYHGHADALLIKSGSGAATLGLPDSPGVPDSVAAHTLTAPYNS 191 RLARGYTKR KI+KF+G YHGH D+LLIK+GSG ATLGLPDSPGVP+SVA HT+T PYN Sbjct: 128 RLARGYTKRNKIIKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVPESVAQHTITVPYND 187 Query: 192 MDSVRFLFEQYGEQIAAVIVEPVAGNMGVIPPVPGFLHGLREITKQYGSLLIFDEVMTGY 251 +DSVR+ FE++GE IAAVIVEPVAGNMGV+PPVPGFL GLR++TKQYG+LLIFDEVMTG+ Sbjct: 188 LDSVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLEGLRKVTKQYGALLIFDEVMTGF 247 Query: 252 RVGFHGAQGLYGIDPDLTCLGKIIGGGLPVGAYGGKREIMEQVAPVGSIYQAGTLSGNPL 311 RV +H AQG YGI+PDLTCLGK+IGGGLPVGAYGGK EIME VAP G +YQAGTLSGNPL Sbjct: 248 RVDYHCAQGYYGIEPDLTCLGKVIGGGLPVGAYGGKAEIMELVAPNGPVYQAGTLSGNPL 307 Query: 312 AMAAGYRTLRLLEGPGVYEELDRKAASLTEGFLQIAKLAGIPLKINRVGSMFSAFFSEQE 371 AM AGY TLR L P YEEL RKAA L +G Q A+ IP INR GSM FF+ + Sbjct: 308 AMTAGYETLRQLT-PETYEELGRKAARLADGLHQAAEKYDIPHTINRAGSMIGFFFTNEP 366 Query: 372 VVDYDTAKRSNMQIFKAYYAAMLELGILTAPTPYEVNFVSTAHSDEDIERSISAYYQALI 431 VV+Y+TAK S++++F AYY M GI P+ +E F+STAHSD+DIE +I+A + Sbjct: 367 VVNYETAKTSDLELFAAYYREMANEGIFLPPSQFEGLFLSTAHSDDDIEYTIAAAERVFA 426 Query: 432 RI 433 R+ Sbjct: 427 RL 428 >Q5KWK9.1 GSA2_GEOKA Glutamate-1-semialdehyde 2,1-aminomutase 2 EC=5.4.3.8 Length = 429 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 281/422 (66%), Positives = 341/422 (80%), Gaps = 1/422 (0%) Query: 12 SIAAFERAKRVIPGGVNSPVRAFSTVNLPPVFAARGQGAHLFDIDGNEFIDYIGSWGPLI 71 S A+E A +++PGGVNSPVRAF +V + P+F ARGQGA ++DIDGNE+IDY+ SWGPLI Sbjct: 7 SKTAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLI 66 Query: 72 LGHAHPEVVEAIREAAFQGTSFGLSTEIEIKMAEWICRSMPSIEMVRMVNSGTEASMSAL 131 LGHA+P+VVEA++ A QGTSFG T +E ++A+ + +PS+E+VRMVNSGTEA+MSAL Sbjct: 67 LGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSAL 126 Query: 132 RLARGYTKRQKIVKFQGGYHGHADALLIKSGSGAATLGLPDSPGVPDSVAAHTLTAPYNS 191 RLARGYTKR KI+KF+G YHGH D+LLIK+GSG ATLGLPDSPGVP+SVA HT+T PYN Sbjct: 127 RLARGYTKRNKIMKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVPESVAQHTITVPYND 186 Query: 192 MDSVRFLFEQYGEQIAAVIVEPVAGNMGVIPPVPGFLHGLREITKQYGSLLIFDEVMTGY 251 +DSVR+ FE++GE IAAVIVEPVAGNMGV+PPVPGFL GLRE+TKQYG+LLIFDEVMTG+ Sbjct: 187 LDSVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLEGLREVTKQYGALLIFDEVMTGF 246 Query: 252 RVGFHGAQGLYGIDPDLTCLGKIIGGGLPVGAYGGKREIMEQVAPVGSIYQAGTLSGNPL 311 RV +H AQG YGI+PDLTCLGK+IGGGLPVGAYGGK EIME VAP G +YQAGTLSGNPL Sbjct: 247 RVDYHCAQGYYGIEPDLTCLGKVIGGGLPVGAYGGKAEIMELVAPSGPVYQAGTLSGNPL 306 Query: 312 AMAAGYRTLRLLEGPGVYEELDRKAASLTEGFLQIAKLAGIPLKINRVGSMFSAFFSEQE 371 AM AGY TLR L P YEEL RKAA L +G Q A+ IP INR GSM FF+ + Sbjct: 307 AMTAGYETLRQLT-PETYEELGRKAARLADGLHQAAEKYDIPHTINRAGSMIGFFFTNEP 365 Query: 372 VVDYDTAKRSNMQIFKAYYAAMLELGILTAPTPYEVNFVSTAHSDEDIERSISAYYQALI 431 VV+Y+TAK S++++F AYY M GI P+ +E F+STAHSD+DIE +I+A + Sbjct: 366 VVNYETAKTSDLELFAAYYREMANEGIFLPPSQFEGLFLSTAHSDDDIEYTIAAAERVFA 425 Query: 432 RI 433 R+ Sbjct: 426 RL 427 >A4IRG2.1 A4IRG2_GEOTN Glutamate-1-semialdehyde 2,1-aminotransferase Length = 429 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 280/422 (66%), Positives = 339/422 (80%), Gaps = 1/422 (0%) Query: 12 SIAAFERAKRVIPGGVNSPVRAFSTVNLPPVFAARGQGAHLFDIDGNEFIDYIGSWGPLI 71 S AA+E A ++PGGVNSPVRAF +V + P+F ARGQGA ++DIDGNE+IDY+ SWGPLI Sbjct: 7 SKAAYEEAVTLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLI 66 Query: 72 LGHAHPEVVEAIREAAFQGTSFGLSTEIEIKMAEWICRSMPSIEMVRMVNSGTEASMSAL 131 LGHA P+VVEA++ A QGTSFG T +E ++A+ + +PS+E+VRMVNSGTEA+MSAL Sbjct: 67 LGHADPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSAL 126 Query: 132 RLARGYTKRQKIVKFQGGYHGHADALLIKSGSGAATLGLPDSPGVPDSVAAHTLTAPYNS 191 RLARGYTKR KI+KF+G YHGH D+LLIK+GSG ATLGLPDSPGVP SVA HT+T PYN Sbjct: 127 RLARGYTKRNKIIKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVPQSVAQHTITVPYND 186 Query: 192 MDSVRFLFEQYGEQIAAVIVEPVAGNMGVIPPVPGFLHGLREITKQYGSLLIFDEVMTGY 251 +DSVR+ FE++GE IAAVIVEPVAGNMGV+PPVPGFL GLR++TKQYG+LLIFDEVMTG+ Sbjct: 187 LDSVRYAFERFGEDIAAVIVEPVAGNMGVVPPVPGFLEGLRDVTKQYGALLIFDEVMTGF 246 Query: 252 RVGFHGAQGLYGIDPDLTCLGKIIGGGLPVGAYGGKREIMEQVAPVGSIYQAGTLSGNPL 311 RV +H AQG YG++PDLTCLGK+IGGGLPVGAYGGK EIMEQVAP G +YQAGTLSGNPL Sbjct: 247 RVDYHCAQGYYGVEPDLTCLGKVIGGGLPVGAYGGKAEIMEQVAPSGPVYQAGTLSGNPL 306 Query: 312 AMAAGYRTLRLLEGPGVYEELDRKAASLTEGFLQIAKLAGIPLKINRVGSMFSAFFSEQE 371 AM AGY TLR L P Y+E RKAA L EG Q A+ IP INR GSM FF+ + Sbjct: 307 AMTAGYETLRQLT-PETYKEFRRKAARLEEGLHQAAEKYEIPHTINRAGSMIGFFFTNEP 365 Query: 372 VVDYDTAKRSNMQIFKAYYAAMLELGILTAPTPYEVNFVSTAHSDEDIERSISAYYQALI 431 V++Y+TAK S++++F AYY M GI P+ +E F+STAHSDEDIE +I+A + Sbjct: 366 VINYETAKTSDLELFAAYYREMANEGIFLPPSQFEGLFLSTAHSDEDIEYTIAAAERVFA 425 Query: 432 RI 433 R+ Sbjct: 426 RL 427 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,600,082,158 Number of extensions: 111798880 Number of successful extensions: 310116 Number of sequences better than 1.0e-05: 8374 Number of HSP's gapped: 287605 Number of HSP's successfully gapped: 8484 Length of query: 437 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 298 Effective length of database: 1,751,175,118 Effective search space: 521850185164 Effective search space used: 521850185164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)