BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0416.0005.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65LS4.1 Q65LS4_BACLD Phosphoserine aminotransferase EC=2.6.1.52       84   4e-15
Q9KDM4.1 SERC_BACHD Phosphoserine aminotransferase EC=2.6.1.52         83   7e-15
A5UVE1.1 A5UVE1_ROSS1 Phosphoserine aminotransferase EC=2.6.1.52       82   1e-14
B1DDH5.1 B1DDH5_9BACL Phosphoserine aminotransferase EC=2.6.1.52       82   2e-14
A7NPB7.1 A7NPB7_ROSCS Phosphoserine aminotransferase EC=2.6.1.52       82   2e-14

>Q65LS4.1 Q65LS4_BACLD Phosphoserine aminotransferase EC=2.6.1.52
          Length = 357

 Score = 84.0 bits (206), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 50/63 (79%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M+ T NFNAGP ALP EVLQ+A++E  D+ G G S++E+SHRSK Y+A+H +A+ L+KEL
Sbjct: 1  MIRTTNFNAGPAALPLEVLQKAKDEFLDFNGAGMSVMELSHRSKEYDAVHQKAKALLKEL 60

Query: 61 MGI 63
          M I
Sbjct: 61 MDI 63


>Q9KDM4.1 SERC_BACHD Phosphoserine aminotransferase EC=2.6.1.52
          Length = 361

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNFNAGP ALP EVL++AQ EL D+   G S++E+SHRSK YE +HH A QL+++L
Sbjct: 1  MKRAYNFNAGPSALPTEVLEKAQSELLDFENTGMSVMELSHRSKEYENVHHTAAQLLRDL 60

Query: 61 MGI 63
          + I
Sbjct: 61 LNI 63


>A5UVE1.1 A5UVE1_ROSS1 Phosphoserine aminotransferase EC=2.6.1.52
          Length = 361

 Score = 82.4 bits (202), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 48/63 (76%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNFNAGP  LPA VL++AQ ELRDY+G G SILE+SHRS  YEAI+ EA + +K L
Sbjct: 1  MSTIYNFNAGPAILPASVLEQAQHELRDYQGRGMSILEMSHRSPEYEAINAEAAERLKRL 60

Query: 61 MGI 63
          +G+
Sbjct: 61 LGV 63


>B1DDH5.1 B1DDH5_9BACL Phosphoserine aminotransferase EC=2.6.1.52
          Length = 362

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNFNAGP ALP EVLQ+AQE+  +Y+G G SI+E+SHRS +YE +++++Q L++EL
Sbjct: 1  MKRAYNFNAGPAALPLEVLQQAQEQFVEYQGAGMSIMEMSHRSALYEQVNNDSQALMREL 60

Query: 61 MGI 63
           GI
Sbjct: 61 FGI 63


>A7NPB7.1 A7NPB7_ROSCS Phosphoserine aminotransferase EC=2.6.1.52
          Length = 361

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%)

Query: 1  MVNTYNFNAGPGALPAEVLQEAQEELRDYRGIGASILEISHRSKVYEAIHHEAQQLIKEL 60
          M   YNFNAGP  LPA VL+ AQ ELRDY+G G SILE+SHRS  YEAI+ EA + +K L
Sbjct: 1  MSAIYNFNAGPAILPAPVLERAQRELRDYQGRGMSILEMSHRSPEYEAINTEAAERLKRL 60

Query: 61 MGI 63
          +G+
Sbjct: 61 LGV 63


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 365,187,736
Number of extensions: 10570690
Number of successful extensions: 32590
Number of sequences better than 1.0e-05: 801
Number of HSP's gapped: 32587
Number of HSP's successfully gapped: 801
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)