BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0003.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z6G2.1 C0Z6G2_BREBN Putative transcriptional regulator 203 4e-51 B4AFJ7.1 B4AFJ7_BACPU Putative GntR family transcriptional regul... 123 5e-27 A8FBP8.1 A8FBP8_BACP2 Possible GntR family transcriptional regul... 123 6e-27 Q1IPM7.1 Q1IPM7_ACIBL Transcriptional regulator, GntR family 82 2e-14 B2VIX7.1 B2VIX7_ERWT9 GntR-family regulatory protein 78 2e-13 >C0Z6G2.1 C0Z6G2_BREBN Putative transcriptional regulator Length = 480 Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 104/147 (70%), Positives = 120/147 (81%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 GIRISAIVGP EAI QLA+V TYRHLP +EQ+ L HFIEHG+FMRHMRR +N+YRRRH Sbjct: 327 GIRISAIVGPKEAIRQLAHVHELTYRHLPIMEQLTLTHFIEHGHFMRHMRRVRNVYRRRH 386 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCLE 125 E M KAI +GLG FTL G+ETGLH+LLEAD+SFDEE T AL+ G+RV+ L YCL+ Sbjct: 387 EAMTKAIITTGLGEHFTLSGVETGLHILLEADQSFDEEAATILALENGIRVYPLSKYCLK 446 Query: 126 SRRKGWVLGFAKVDERFIEEGMYRLAE 152 S RKGWVLGFAKVDE IEEG++RLAE Sbjct: 447 SDRKGWVLGFAKVDESTIEEGIFRLAE 473 >B4AFJ7.1 B4AFJ7_BACPU Putative GntR family transcriptional regulator Length = 479 Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 59/149 (39%), Positives = 87/149 (58%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 GIR++AI+G I ++A++Q+ R LP +EQ+ LA F G F R++RR + +Y++R Sbjct: 329 GIRLAAIIGSKAVIKEIASLQSLIQRQLPIMEQITLASFFREGEFTRYVRRMRQLYKKRQ 388 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCLE 125 M A+ F + G +TGLHV LE FDE+ A G+ ++ L YC E Sbjct: 389 AAMMGALLTQQFDKHFHIYGTDTGLHVFLEGAPDFDEKGSIEAAKAAGIGIYPLSPYCFE 448 Query: 126 SRRKGWVLGFAKVDERFIEEGMYRLAETV 154 S RKG +LGFA DE I+EG+ RL + + Sbjct: 449 SNRKGLLLGFACTDENMIQEGVRRLKQIL 477 >A8FBP8.1 A8FBP8_BACP2 Possible GntR family transcriptional regulator Length = 479 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 86/147 (58%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 GIR++AI+G I ++A++Q+ R LP +EQ+ LA F G F R++RR + +Y++R Sbjct: 329 GIRLAAIIGSKAVIKEIASLQSLIQRQLPIMEQITLASFFREGEFTRYVRRMRQLYKKRQ 388 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCLE 125 M A+ F + G +TGLHV LE FDE+ A G+ ++ L YC E Sbjct: 389 ATMMDALLTHQFDKHFHIYGTDTGLHVFLEGAPDFDEKGSIEAAKAAGIGIYPLSPYCFE 448 Query: 126 SRRKGWVLGFAKVDERFIEEGMYRLAE 152 S RKG +LGFA DE I+EG+ RL + Sbjct: 449 SNRKGLLLGFACTDEDMIQEGVRRLKQ 475 >Q1IPM7.1 Q1IPM7_ACIBL Transcriptional regulator, GntR family Length = 477 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 84/147 (57%), Gaps = 2/147 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 +R+ ++ P IA + + RH P LEQ LA F+ G++ R++RR + +R Sbjct: 329 ALRLGYLIVPKSLIAAFSAAKWLCDRHSPTLEQQTLAEFLAGGHYERYLRRVRQRNSKRR 388 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHSYCL- 124 EV+ ++I A LG++ T+ G G H++L + + +E+ + A + GVRV+ + Y + Sbjct: 389 EVLLESI-AKHLGSRVTVTGQNAGAHIVLWLNRNRNEDKLVQAAAEVGVRVYGIAPYYIH 447 Query: 125 ESRRKGWVLGFAKVDERFIEEGMYRLA 151 R G +LG++++ E IE+G+ RLA Sbjct: 448 PPRAAGLMLGYSRLRESEIEDGIRRLA 474 >B2VIX7.1 B2VIX7_ERWT9 GntR-family regulatory protein Length = 493 Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 6 GIRISAIVGPAEAIAQLANVQAFTYRHLPFLEQMALAHFIEHGYFMRHMRRAKNIYRRRH 65 G+R+S +V P A++ + YR LEQ+ LA FI G++ H+RR + +Y RR Sbjct: 339 GLRLSYMVVPKPLAARMKMAHSELYRGGNGLEQLTLAEFIREGHYAAHVRRMRQLYSRRR 398 Query: 66 EVMQKAITASGLGNKFTLRGIETGLHVLLEADESFDEETMTFRALQGGVRVHQLHS-YCL 124 + + I + LG F R GLH++L ++ D+ ++ Q GV L + Y L Sbjct: 399 AALVQTIREN-LGESFIARQTNAGLHLILALPDNIDDVALSAELEQNGVLTRPLSAYYLL 457 Query: 125 ESRRKGWVLGFAKVDERFIEE 145 + R+G +LG+A VDE+ + E Sbjct: 458 GTARRGLLLGYACVDEQQMAE 478 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 853,180,115 Number of extensions: 30712349 Number of successful extensions: 92426 Number of sequences better than 1.0e-05: 768 Number of HSP's gapped: 92320 Number of HSP's successfully gapped: 768 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)