BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0002.p (129 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZIN1.1 C0ZIN1_BREBN Putative uncharacterized protein 152 6e-36 C0Z8Q5.1 C0Z8Q5_BREBN Putative uncharacterized protein 150 3e-35 Q75V24.1 Q75V24_STAWA Putative uncharacterized protein 101 2e-20 Q8EMR2.1 Q8EMR2_OCEIH Hypothetical conserved protein 97 4e-19 B2IJN4.1 B2IJN4_BEII9 Alkylhydroperoxidase like protein, AhpD fa... 86 1e-15 >C0ZIN1.1 C0ZIN1_BREBN Putative uncharacterized protein Length = 126 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 73/128 (57%), Positives = 95/128 (74%), Gaps = 6/128 (4%) Query: 3 YYDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALAVAHVTGCPYCI 62 Y NL++IP+LI+L+PEAA SYL FEH+VY+ +P +TKEL+A+ VAHVTGCPYCI Sbjct: 4 YLSPANLQRIPELIKLSPEAAASYLDFEHQVYQTANTLPQKTKELLAVTVAHVTGCPYCI 63 Query: 63 DTHVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEE-DRTQEQQMSNEVQP 121 D HVKK+++LGGT EEI EA+LVA TRAGA+LSH ++L++YEE + Q+ SNE Sbjct: 64 DVHVKKYKALGGTMEEIMEALLVAASTRAGAILSHGVNALISYEEGEENAPQKGSNE--- 120 Query: 122 KQKPDCFC 129 CFC Sbjct: 121 --GIKCFC 126 >C0Z8Q5.1 C0Z8Q5_BREBN Putative uncharacterized protein Length = 120 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/128 (53%), Positives = 93/128 (72%), Gaps = 13/128 (10%) Query: 2 NYYDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALAVAHVTGCPYC 61 +YY+S NL IP+L++LAP+AA SY +FE ++Y++ +P++TKELIA+ VAHVTGCPYC Sbjct: 6 SYYESANLSHIPELMKLAPDAAASYFSFERQIYQQSHQLPVKTKELIAIVVAHVTGCPYC 65 Query: 62 IDTHVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEEDRTQEQQMSNEVQP 121 ID HVKK++ LGGT EEI EA+LVA TR+GA+LSH ++L+AY + Sbjct: 66 IDVHVKKYKELGGTMEEIMEALLVAAVTRSGAILSHGVNALLAYHD-------------A 112 Query: 122 KQKPDCFC 129 KPDCFC Sbjct: 113 PGKPDCFC 120 >Q75V24.1 Q75V24_STAWA Putative uncharacterized protein Length = 219 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/104 (41%), Positives = 78/104 (75%), Gaps = 1/104 (0%) Query: 4 YDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALAVAHVTGCPYCID 63 Y ++ K++ + +L+ ++ +S++ F+H+V E + + KE+I++AVAH TGCP+CID Sbjct: 8 YKRSHTKRLVEFTKLSHDSFKSFIEFDHQVLSE-GHLSKKFKEVISIAVAHTTGCPHCID 66 Query: 64 THVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEE 107 HVK+F+ LGGT+EE+ E+++VAT +AG+ ++H+ ++L AY+E Sbjct: 67 HHVKQFKKLGGTKEEMAESIMVATALKAGSAMAHSVNTLNAYDE 110 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 71/106 (66%), Gaps = 5/106 (4%) Query: 4 YDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKA--IPLRTKELIALAVAHVTGCPYC 61 Y ++ K++ +L +L E ++++ F+ + +KA + ++ KELIA+AVAH TGCPYC Sbjct: 117 YKASYFKRLKELGQLDGERFKAFINFDQQA---MKAGLLTVKEKELIAIAVAHTTGCPYC 173 Query: 62 IDTHVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEE 107 ID H K + T+EE+ EA+LVAT +AG+ +SH ++L AY+E Sbjct: 174 IDIHTKSAKKAKVTKEEVAEAILVATLLKAGSAMSHGVNALNAYDE 219 >Q8EMR2.1 Q8EMR2_OCEIH Hypothetical conserved protein Length = 222 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 1/109 (0%) Query: 4 YDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALAVAHVTGCPYCID 63 Y + +I +L APE S+ F ++ EE K + ++ KELIA+AVAH+TGCPYCI+ Sbjct: 10 YKKSYFSRIQELKEFAPEVFHSFFAFNNKALEEGK-LSVKQKELIAVAVAHITGCPYCIE 68 Query: 64 THVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEEDRTQE 112 HV + G +EE+ EA+ VAT +AG+ L+H + L AY+E+ E Sbjct: 69 LHVGNVKKQGADKEEVTEAIFVATALKAGSSLAHGVNGLNAYDENGDDE 117 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 72/117 (61%), Gaps = 10/117 (8%) Query: 1 MNYYDSNN---------LKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALA 51 +N YD N K++ +L + +A +++LTF+ EE K + ++ KELIA+A Sbjct: 107 LNAYDENGDDELYKASYFKRLQELSETSEDAFKAFLTFDGATLEEGK-LTVKEKELIAVA 165 Query: 52 VAHVTGCPYCIDTHVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATHSLVAYEED 108 AH TGC YCID H K + G +++E+ EA+ VA +AG+ L+H+ ++L AY+++ Sbjct: 166 SAHTTGCAYCIDLHTKNAKKAGASKDELSEAIFVAVALKAGSALAHSVNALNAYDDE 222 >B2IJN4.1 B2IJN4_BEII9 Alkylhydroperoxidase like protein, AhpD family Length = 101 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Query: 4 YDSNNLKKIPDLIRLAPEAAQSYLTFEHEVYEELKAIPLRTKELIALAVAHVTGCPYCID 63 YD NLKK+ L + AP A +++ F+ + AIP++ KELIALAVA T CPYC++ Sbjct: 2 YDMANLKKLELLAKDAPAAMEAFKAFDKAAMAD-GAIPVKYKELIALAVALTTQCPYCLE 60 Query: 64 THVKKFQSLGGTREEIFEAVLVATCTRAGAVLSHATH 100 H + + G T++EI E V VA RAG L+H TH Sbjct: 61 VHKRGAERAGATQQEIAETVFVAMALRAGGALTHGTH 97 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.131 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 734,825,040 Number of extensions: 24611294 Number of successful extensions: 68030 Number of sequences better than 1.0e-05: 181 Number of HSP's gapped: 68073 Number of HSP's successfully gapped: 184 Length of query: 129 Length of database: 3,060,696,203 Length adjustment: 94 Effective length of query: 35 Effective length of database: 2,175,120,793 Effective search space: 76129227755 Effective search space used: 76129227755 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)