BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0416.0001.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8Q4.1 C0Z8Q4_BREBN Transcriptional regulator 179 1e-43 B9LC23.1 B9LC23_CHLSY Transcriptional regulator, Crp/Fnr family 124 6e-27 A9WK55.1 A9WK55_CHLAA Cyclic nucleotide-binding 124 6e-27 B8GR25.1 B8GR25_THISH Putative transcriptional regulator, Crp/Fn... 119 1e-25 C0GCF9.1 C0GCF9_9FIRM Transcriptional regulator, Crp/Fnr family 115 2e-24 >C0Z8Q4.1 C0Z8Q4_BREBN Transcriptional regulator Length = 224 Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/185 (48%), Positives = 122/185 (65%) Query: 11 STSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPYX 70 S L++++GH+F HA FVL G VRI+ +E GRE+TLYRVQ G CVLMMASILG+T Y Sbjct: 35 SPQLTMQQGHLFAHAAFVLSGKVRIYIISESGREVTLYRVQRGGVCVLMMASILGETGYE 94 Query: 71 XXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYRI 130 P+ +FK W++ + L+QFI+ M+ R+ SV +L++++AF+PIN RI Sbjct: 95 ASAQLEEETELLLLPVDVFKDWMDHYKDLRQFIYRNMINRMVSVTSLVEDIAFKPINARI 154 Query: 131 AQFLLGRTDENHATLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDRDR 190 A+ LL RT ++H L ITHE AIELGTAREV+SR+LK + GRG I + RD Sbjct: 155 AELLLRRTTDSHNHLSITHEAIAIELGTAREVISRSLKEFEKAGWLQLGRGRITAIRRDA 214 Query: 191 LIQVL 195 L + L Sbjct: 215 LQEKL 219 >B9LC23.1 B9LC23_CHLSY Transcriptional regulator, Crp/Fnr family Length = 226 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 93/163 (57%) Query: 31 GTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPYXXXXXXXXXXXXXXXPIPLFK 90 G +R+FK E GREITLYR G++C+L + +L + + +F+ Sbjct: 59 GQIRVFKIGETGREITLYRFGRGESCILTTSCVLSNHQFPAIAVVEREATAFLVGQAIFR 118 Query: 91 KWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYRIAQFLLGRTDENHATLRITHE 150 WIE + ++F + R+ SVM ++D +AFR ++ R+A FLL + + TL +TH+ Sbjct: 119 DWIERYSAWRDYVFQLLSRRLASVMAIIDEIAFRRVDVRLAAFLLRQAVGDPPTLNLTHQ 178 Query: 151 QAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDRDRLIQ 193 Q A ELGT+REVVSR L ++ LIS RG I V DR RL Q Sbjct: 179 QIAAELGTSREVVSRILADFSEEGLISSSRGQITVCDRTRLYQ 221 >A9WK55.1 A9WK55_CHLAA Cyclic nucleotide-binding Length = 226 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 93/163 (57%) Query: 31 GTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTPYXXXXXXXXXXXXXXXPIPLFK 90 G +R+FK E GREITLYR G++C+L + +L + + +F+ Sbjct: 59 GQIRVFKIGETGREITLYRFGRGESCILTTSCVLSNHQFPAIAVVEREATAFLVGQAIFR 118 Query: 91 KWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINYRIAQFLLGRTDENHATLRITHE 150 WIE + ++F + R+ SVM ++D +AFR ++ R+A FLL + + TL +TH+ Sbjct: 119 DWIERYSAWRDYVFQLLSRRLASVMAIIDEIAFRRVDVRLAAFLLRQAVGDPPTLNLTHQ 178 Query: 151 QAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDRDRLIQ 193 Q A ELGT+REVVSR L ++ LIS RG I V DR RL Q Sbjct: 179 QIAAELGTSREVVSRILADFSEEGLISSSRGQITVCDRTRLYQ 221 >B8GR25.1 B8GR25_THISH Putative transcriptional regulator, Crp/Fnr family Length = 223 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 69/183 (37%), Positives = 97/183 (53%), Gaps = 1/183 (0%) Query: 9 SPSTSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASILGDTP 68 +P ++ R G + + + V G+VR+ + + GREI LYRVQ G++CVL + +LG Sbjct: 36 APEGTVVFRPGSVCEQYLLVTEGSVRVQQTSSSGREIVLYRVQTGESCVLTTSCLLGGNR 95 Query: 69 YXXXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRPINY 128 Y P P F + IE ++F+F RI +MTL+D VAF +N Sbjct: 96 YGAEGICETSIQGIAIPAPRFMEGIESSPGFRRFVFQGYGHRIAELMTLIDEVAFGRLNV 155 Query: 129 RIAQFLLGRTDENHATLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIEVLDR 188 R+AQ LL L TH+ A+ELG+AREVVSRALK + RG I++LDR Sbjct: 156 RLAQRLL-ELAHGQDALHCTHQDLAVELGSAREVVSRALKDFERQGWVHLSRGQIDLLDR 214 Query: 189 DRL 191 L Sbjct: 215 PAL 217 >C0GCF9.1 C0GCF9_9FIRM Transcriptional regulator, Crp/Fnr family Length = 229 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 109/191 (57%), Gaps = 2/191 (1%) Query: 6 RTVSPSTSLSIREGHIFQHAVFVLCGTVRIFKGNEQGREITLYRVQDGQNCVLMMASILG 65 R +P + L + +G + F+L G++RI + +E+GRE+ LYR+ G C++ SI+ Sbjct: 38 RQFTPGSVL-MEDGFSCNNIFFILDGSIRISRISEEGREVVLYRIHRGDFCLMTAYSIMT 96 Query: 66 DTPYXXXXXXXXXXXXXXXPIPLFKKWIEICQPLKQFIFGQMVERITSVMTLLDNVAFRP 125 DT + P +FK+ ++ L+ FIF + R+ V+ +L+N+ F Sbjct: 97 DTDFPAIAQVEEQTEVIALPAKVFKQILQENPQLQSFIFASSLNRLKDVIGVLENITFTG 156 Query: 126 INYRIAQFLLGRTDENHA-TLRITHEQAAIELGTAREVVSRALKVLTDNRLISQGRGYIE 184 I R+A+FL+ +E + L+ITHEQ A+E+G++REV+SR LK L + + RG I+ Sbjct: 157 IKQRLAKFLIMLANERSSDKLKITHEQIALEIGSSREVISRTLKNLEEEGAVQLSRGRIQ 216 Query: 185 VLDRDRLIQVL 195 +L + L +++ Sbjct: 217 ILSLESLKKII 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 976,355,035 Number of extensions: 32643347 Number of successful extensions: 96090 Number of sequences better than 1.0e-05: 171 Number of HSP's gapped: 96174 Number of HSP's successfully gapped: 171 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)