BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0415.0008.p (176 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q189I4.1 Q189I4_CLOD6 Putative uncharacterized protein 111 3e-23 C3GKA5.1 C3GKA5_BACTU Putative uncharacterized protein 96 1e-18 C2VV47.1 C2VV47_BACCE Putative uncharacterized protein 96 2e-18 B3ZJ61.1 B3ZJ61_BACCE Putative uncharacterized protein 95 2e-18 A0RFC3.1 A0RFC3_BACAH Putative uncharacterized protein 94 5e-18 >Q189I4.1 Q189I4_CLOD6 Putative uncharacterized protein Length = 162 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 66/171 (38%), Positives = 97/171 (56%), Gaps = 11/171 (6%) Query: 3 RYWTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLWTE 62 +++T QT+E W ++ YL + FI + Y WM QM RI + + IW+WT+ Sbjct: 2 KFYTIQTLEFWNNNKNNKYLSNDYSFILEDFDIPYKWMYSQMTNRIYEF-DDSMIWVWTK 60 Query: 63 KPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122 +PDLR SG+ G V LE+EI + VLLS+FD WH L D + L E E Sbjct: 61 RPDLRCSGYLEKGKKGVLLEIEISEDNVLLSEFDLWHLPLMDIAVELYEDE--------- 111 Query: 123 KMSKEESWERIFNLGLLRESPWWNSEP-HLQGVSGKIKISHVCNVREFIAR 172 ++ K+ SWERIF+L L + N E LQGV+ K+ +S+V ++EF+A+ Sbjct: 112 QIEKKVSWERIFDLELCSKLNEVNIEDLTLQGVTSKVPLSNVKLIKEFVAK 162 >C3GKA5.1 C3GKA5_BACTU Putative uncharacterized protein Length = 220 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 90/174 (51%), Gaps = 8/174 (4%) Query: 5 WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLW--TE 62 +T QT EAW++ + +GYL GN +FI + + Y WM+R K ++P+Y G +PIW+W Sbjct: 4 YTVQTEEAWKQFKKLGYLEGNKEFIDSDDIYSYDWMVRVAKTKLPHYEGNYPIWVWEANN 63 Query: 63 KPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122 P+ + V L +++P E VL SD W C + DS M +A+ A Sbjct: 64 YPNRNHKAWGRKNSKMVILTLDVPKEWVLWSDISYWCCAMGDSSMYFHQADKPALEEWYT 123 Query: 123 KMSKEESWERIFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFIAR 172 M KE + IF+ L P W + E L QGV GKI +S V VR F A+ Sbjct: 124 YMDKE--YGIIFDFVYLLSHPDWYLDKEDSLEKQGVIGKIPLSFVKKVRRFRAK 175 >C2VV47.1 C2VV47_BACCE Putative uncharacterized protein Length = 220 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 8/174 (4%) Query: 5 WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLW--TE 62 +T QT EAW++ + +GYL GN +FI + + Y WM+R K ++P+Y G +PIW+W Sbjct: 4 YTVQTEEAWKQFKKLGYLEGNKEFIDSDDIYSYDWMVRVAKTKLPHYEGNYPIWVWEANN 63 Query: 63 KPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122 P+ + V L +++P E VL SD W C + DS M +A A Sbjct: 64 YPNRNHKAWGRKNSKMVILTLDVPKEWVLWSDISYWCCAMGDSSMYFHQANKPALEEWYT 123 Query: 123 KMSKEESWERIFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFIAR 172 M KE + IF+ L P W + E L QGV GKI +S V VR F A+ Sbjct: 124 YMDKE--YGIIFDFDYLLSHPDWYLDKEDSLEKQGVIGKIPLSFVKKVRRFRAK 175 >B3ZJ61.1 B3ZJ61_BACCE Putative uncharacterized protein Length = 220 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 24/185 (12%) Query: 5 WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLWTEKP 64 +T QT EAW++ + +GYL GN + I E + Y WM+R+ KKR+ +Y G +PIW+W E Sbjct: 4 YTVQTEEAWKQFKKLGYLEGNKEAIDPEFIYSYDWMVREAKKRLLHYDGNYPIWVWEESD 63 Query: 65 DLRRSGHFNGGTH--AVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122 R+G G + V L +++P E VL S FD W C + D +FY+N+ Sbjct: 64 YPNRNGKAWGSENLKMVILTLDVPKEWVLWSYFDYWCCAMADG----------SFYKNQT 113 Query: 123 KMSKEESWER--------IFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFI 170 E W IF+ L P W E L QGV G+I +SHV V+ F Sbjct: 114 DQPTIEKWFTYMDKEYGIIFDFDYLLSHPDWCLGKEDSLKKQGVIGRIPLSHVKKVQRFR 173 Query: 171 ARGTK 175 A+ K Sbjct: 174 AKEGK 178 >A0RFC3.1 A0RFC3_BACAH Putative uncharacterized protein Length = 220 Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 8/174 (4%) Query: 5 WTNQTIEAWEKAQDIGYLVGNSDFIWGEMLGDYHWMMRQMKKRIPNYLGEFPIWLW--TE 62 +T QT EAW++ + +GYL GN +FI + + Y WM+R ++P+Y G +PIW+W Sbjct: 4 YTVQTEEAWKQFKKLGYLEGNKEFIDSDDIYSYDWMVRVATTKLPHYEGNYPIWVWEANN 63 Query: 63 KPDLRRSGHFNGGTHAVSLEVEIPSEQVLLSDFDAWHCVLNDSFMALDEAEWEAFYRNEL 122 P+ + V L +++P E VL SD W C + DS M +A+ A Sbjct: 64 YPNRNHKAWGRKNSKMVILTLDVPKEWVLWSDISYWCCAMCDSSMYFHQADKPALEEWYT 123 Query: 123 KMSKEESWERIFNLGLLRESPWW--NSEPHL--QGVSGKIKISHVCNVREFIAR 172 M KE + IF+ L P W + E L QGV GKI +S V VR F A+ Sbjct: 124 YMDKE--YGIIFDFDYLLSHPDWYLDKEDSLEKQGVIGKIPLSFVKKVRRFRAK 175 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,208,163,939 Number of extensions: 50740631 Number of successful extensions: 98336 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 98259 Number of HSP's successfully gapped: 46 Length of query: 176 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 50 Effective length of database: 1,873,648,313 Effective search space: 93682415650 Effective search space used: 93682415650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)