BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0415.0001.p
         (131 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q2L5V3.1 Q2L5V3_CLOPE Permease                                        101   3e-20
B1RK44.1 B1RK44_CLOPE Permease                                        101   3e-20
C1I240.1 C1I240_9CLOT Permease (Fragment)                              97   5e-19

>Q2L5V3.1 Q2L5V3_CLOPE Permease
          Length = 253

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 63/97 (64%)

Query: 1   LPIDLRKTFISKTXXXXXXXXXXXXXXXXXXXXXECILSGVSAAMGHSGYYLVGYCLLWL 60
           LPIDL+K FISKT                     E +LSG S A+ + G+Y++GY LLW 
Sbjct: 85  LPIDLKKIFISKTILIALNLLVISLLLSFISIISELVLSGFSVAIVYIGHYILGYILLWF 144

Query: 61  SLLWQIPFCLFLDQKAGFVGSVIINLFASASGGLFFS 97
           SLLWQIP CLFLDQK GF+ S+I++LF SA GGLFF+
Sbjct: 145 SLLWQIPLCLFLDQKVGFIASIILSLFLSAFGGLFFA 181


>B1RK44.1 B1RK44_CLOPE Permease
          Length = 253

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 63/97 (64%)

Query: 1   LPIDLRKTFISKTXXXXXXXXXXXXXXXXXXXXXECILSGVSAAMGHSGYYLVGYCLLWL 60
           LPIDL+K FISKT                     E +LSG S A+ + G+Y++GY LLW 
Sbjct: 85  LPIDLKKIFISKTILIALNLLVISLLLSFISIISELVLSGFSVAIVYIGHYILGYILLWF 144

Query: 61  SLLWQIPFCLFLDQKAGFVGSVIINLFASASGGLFFS 97
           SLLWQIP CLFLDQK GF+ S+I++LF SA GGLFF+
Sbjct: 145 SLLWQIPLCLFLDQKVGFIASIILSLFLSAFGGLFFA 181


>C1I240.1 C1I240_9CLOT Permease (Fragment)
          Length = 114

 Score = 96.7 bits (239), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 1   LPIDLRKTFISKTXXXXXXXXXXXXXXXXXXXXXECILSGVSAAMGHSGYYLVGYCLLWL 60
           LPIDL+K FISK                      E +LSG S A+G+ GYY++GY LLW 
Sbjct: 13  LPIDLKKIFISKAILIALNILLISFISIIS----EFVLSGFSVAIGYIGYYILGYILLWF 68

Query: 61  SLLWQIPFCLFLDQKAGFVGSVIINLFASASGGLFFS 97
           SLLWQIP CLFLDQK GF+ S+I++LF SA GGLFF+
Sbjct: 69  SLLWQIPLCLFLDQKVGFIASMILSLFLSAFGGLFFA 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.145    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 608,872,879
Number of extensions: 19073345
Number of successful extensions: 38684
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 38682
Number of HSP's successfully gapped: 3
Length of query: 131
Length of database: 3,060,696,203
Length adjustment: 96
Effective length of query: 35
Effective length of database: 2,156,278,763
Effective search space: 75469756705
Effective search space used: 75469756705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)