BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0412.0020.p
         (94 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DDD4.1 B1DDD4_9BACL Putative uncharacterized protein                 54   4e-06

>B1DDD4.1 B1DDD4_9BACL Putative uncharacterized protein
          Length = 77

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 15/92 (16%)

Query: 3  MYLELKDKSGKVYRSFMNDRQKPVIVINDTEYEVFELIQSQDNSDALSAAQIAELDTDPE 62
          M   LK   G V  S+  +  K  I I   EYE++                + ELD+DPE
Sbjct: 1  MNFSLKAPDGTVIESYEKN-HKEFIRIAGLEYEIYN--------------PVDELDSDPE 45

Query: 63 IAEMIKQSKRDIMHGSIISSKQMIEMIRNGEL 94
          I +MIK S++DIM G + S+ ++IEM + GEL
Sbjct: 46 IRQMIKASEKDIMQGKLYSTDELIEMAKRGEL 77


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.130    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 470,713,602
Number of extensions: 14587211
Number of successful extensions: 42773
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 42773
Number of HSP's successfully gapped: 1
Length of query: 94
Length of database: 3,060,696,203
Length adjustment: 63
Effective length of query: 31
Effective length of database: 2,467,172,258
Effective search space: 76482339998
Effective search space used: 76482339998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)