BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0017.p (486 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65MN0.1 Q65MN0_BACLD Putative uncharacterized protein 842 0.0 A5A692.1 A5A692_BACLD Glycoside Hydrolase Family 1 841 0.0 B4AK23.1 B4AK23_BACPU Beta-glucosidase (Gentiobiase) (Cellobiase... 836 0.0 A8FJ70.1 A8FJ70_BACP2 Beta-glucosidase EC=3.2.1.21 834 0.0 B5XXA4.1 B5XXA4_KLEP3 Beta-glucosidase EC=3.2.1.21 729 0.0 >Q65MN0.1 Q65MN0_BACLD Putative uncharacterized protein Length = 489 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/485 (81%), Positives = 436/485 (89%) Query: 2 SKGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIER 61 +KGFP++FLWGGAIAANQAEGAWNVDGKGPSVADIAMYR +L+VEDYE H V++ IER Sbjct: 5 TKGFPKDFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRSNLSVEDYEGHLAVSSENIER 64 Query: 62 AMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXL 121 AMKDPDV KYPKRRGIDFYH YKED+ALFAEMGFK LR+SIAWSRIFPT L Sbjct: 65 AMKDPDVKKYPKRRGIDFYHHYKEDVALFAEMGFKTLRISIAWSRIFPTGEEAEPSEKGL 124 Query: 122 KFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDL 181 +FYD LF EM++ IEPIVTLSHYEMPLALS+KYNGWVERKVID FVKF+NVCF RYKD+ Sbjct: 125 QFYDRLFQEMKKHNIEPIVTLSHYEMPLALSLKYNGWVERKVIDLFVKFANVCFERYKDV 184 Query: 182 VKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIP 241 VKYWLTFNEIDSI RH F TAGI+P+RCPEGKVEET+YQALHHQFVASALVTADCHRIIP Sbjct: 185 VKYWLTFNEIDSIHRHSFITAGIIPDRCPEGKVEETVYQALHHQFVASALVTADCHRIIP 244 Query: 242 GSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHL 301 GSQVGCMLT LTTYP+TCHP DVE L +NL YFYADVQVFGEYPPLI+ MLE+KNI++ Sbjct: 245 GSQVGCMLTKLTTYPHTCHPSDVERALKQNLDNYFYADVQVFGEYPPLIKRMLERKNINI 304 Query: 302 QMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQVD 361 +ME D I+++HTVDFVSFSYYMSLTESA+EGLE+T GNTI GVKNPYLP TDWGWQ+D Sbjct: 305 KMEADDLAIIKEHTVDFVSFSYYMSLTESAQEGLEKTDGNTIRGVKNPYLPSTDWGWQID 364 Query: 362 PVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEA 421 PVGLKISLIELYDRY+KPL+IVENGMGA D VESDGSIHDDYRI+YFREHF+QMKEA+E Sbjct: 365 PVGLKISLIELYDRYQKPLIIVENGMGAKDVVESDGSIHDDYRISYFREHFRQMKEAIEE 424 Query: 422 GVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESN 481 GVDLFGYTSWG IDIISA TSQMSKRYGFI+VDQDD+GNG+L+RSRKDSFYWYKKVIE+N Sbjct: 425 GVDLFGYTSWGPIDIISAGTSQMSKRYGFIHVDQDDDGNGTLKRSRKDSFYWYKKVIETN 484 Query: 482 GEDLD 486 GE LD Sbjct: 485 GEVLD 489 >A5A692.1 A5A692_BACLD Glycoside Hydrolase Family 1 Length = 488 Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/485 (81%), Positives = 436/485 (89%) Query: 2 SKGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIER 61 +KGFP++FLWGGAIAANQAEGAWNVDGKGPSVADIAMYR +L+VEDYE H V++ IER Sbjct: 4 TKGFPKDFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRSNLSVEDYEGHLAVSSENIER 63 Query: 62 AMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXL 121 AMKDPDV KYPKRRGIDFYH YKED+ALFAEMGFK LR+SIAWSRIFPT L Sbjct: 64 AMKDPDVKKYPKRRGIDFYHHYKEDVALFAEMGFKTLRISIAWSRIFPTGEEAEPSEKGL 123 Query: 122 KFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDL 181 +FYD LF EM++ IEPIVTLSHYEMPLALS+KYNGWVERKVID FVKF+NVCF RYKD+ Sbjct: 124 QFYDRLFQEMKKHNIEPIVTLSHYEMPLALSLKYNGWVERKVIDLFVKFANVCFERYKDV 183 Query: 182 VKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIP 241 VKYWLTFNEIDSI RH F TAGI+P+RCPEGKVEET+YQALHHQFVASALVTADCHRIIP Sbjct: 184 VKYWLTFNEIDSIHRHSFITAGIIPDRCPEGKVEETVYQALHHQFVASALVTADCHRIIP 243 Query: 242 GSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHL 301 GSQVGCMLT LTTYP+TCHP DVE L +NL YFYADVQVFGEYPPLI+ MLE+KNI++ Sbjct: 244 GSQVGCMLTKLTTYPHTCHPSDVERALKQNLDNYFYADVQVFGEYPPLIKRMLERKNINI 303 Query: 302 QMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQVD 361 +ME D I+++HTVDFVSFSYYMSLTESA+EGLE+T GNTI GVKNPYLP TDWGWQ+D Sbjct: 304 KMEADDLAIIKEHTVDFVSFSYYMSLTESAQEGLEKTDGNTIRGVKNPYLPSTDWGWQID 363 Query: 362 PVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEA 421 PVGLKISLIELYDRY+KPL+IVENGMGA D VESDGSIHDDYRI+YFREHF+QMKEA+E Sbjct: 364 PVGLKISLIELYDRYQKPLIIVENGMGAKDVVESDGSIHDDYRISYFREHFRQMKEAIEE 423 Query: 422 GVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESN 481 GVDLFGYTSWG IDIISA TSQMSKRYGFI+VDQDD+GNG+L+RSRKDSFYWYKKVIE+N Sbjct: 424 GVDLFGYTSWGPIDIISAGTSQMSKRYGFIHVDQDDDGNGTLKRSRKDSFYWYKKVIETN 483 Query: 482 GEDLD 486 GE LD Sbjct: 484 GEVLD 488 >B4AK23.1 B4AK23_BACPU Beta-glucosidase (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (Amygdalase) EC=3.2.1.21 Length = 488 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/484 (80%), Positives = 433/484 (89%) Query: 3 KGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIERA 62 KGFP+ FLWGGAIAANQAEGAWN+DGKGPSVADIAMYR +L+VEDYE H VT+ IERA Sbjct: 5 KGFPKGFLWGGAIAANQAEGAWNIDGKGPSVADIAMYRSNLSVEDYEGHLAVTSENIERA 64 Query: 63 MKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXLK 122 +KDPD KYPKRRG+DFYH YKEDLALFAEMGFK LR+SIAWSRIFPT L+ Sbjct: 65 IKDPDDKKYPKRRGVDFYHHYKEDLALFAEMGFKTLRISIAWSRIFPTGEEAEPNEKGLQ 124 Query: 123 FYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDLV 182 FYD +F+EM++L IEPIVTLSHYEMPLALSVKYNGWVERKV+D FVKF+NVCF RY+ V Sbjct: 125 FYDRVFAEMKKLNIEPIVTLSHYEMPLALSVKYNGWVERKVVDLFVKFANVCFERYQHDV 184 Query: 183 KYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIPG 242 KYWLTFNEIDSI RH F TAGI+P+RCPEGKVEET+YQALHHQFVASALVTADCHRIIPG Sbjct: 185 KYWLTFNEIDSIHRHSFITAGIIPDRCPEGKVEETVYQALHHQFVASALVTADCHRIIPG 244 Query: 243 SQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHLQ 302 SQVGCMLT LTTYP+TCHP DVE L +NL YFYADVQVFGEYPPLI MLE+KNIH+ Sbjct: 245 SQVGCMLTKLTTYPHTCHPNDVEQALKQNLENYFYADVQVFGEYPPLITRMLERKNIHIH 304 Query: 303 MEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQVDP 362 ME D IL+++TVDF+SFSYYMSLTESA+EGLE+T GNTI GVKNPYLP TDWGWQ+DP Sbjct: 305 MEADDLNILKENTVDFISFSYYMSLTESAQEGLEQTEGNTIRGVKNPYLPSTDWGWQIDP 364 Query: 363 VGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEAG 422 VGLKISLIELYDRY+KPL+IVENGMGA D+VESDGSIHDDYRINYF+EHF+QM+EA+E G Sbjct: 365 VGLKISLIELYDRYQKPLIIVENGMGAKDKVESDGSIHDDYRINYFKEHFRQMREAIEEG 424 Query: 423 VDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESNG 482 VDLFGYTSWG+IDIISA TSQMSKRYGFI+VDQDD+GNG+L+RSRKDSFYWY+KVIE+NG Sbjct: 425 VDLFGYTSWGSIDIISAGTSQMSKRYGFIHVDQDDDGNGTLKRSRKDSFYWYQKVIETNG 484 Query: 483 EDLD 486 E LD Sbjct: 485 EALD 488 >A8FJ70.1 A8FJ70_BACP2 Beta-glucosidase EC=3.2.1.21 Length = 488 Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/484 (80%), Positives = 432/484 (89%) Query: 3 KGFPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMIERA 62 KGFP+ FLWGGAIAANQAEGAWN+DGKGPSVADIAMYR +L+VEDYE H VT+ IERA Sbjct: 5 KGFPKGFLWGGAIAANQAEGAWNIDGKGPSVADIAMYRSNLSVEDYEGHLAVTSENIERA 64 Query: 63 MKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXXXLK 122 + DPD KYPKRRG+DFYH YKEDLALFAEMGFK LR+SIAWSRIFPT L+ Sbjct: 65 INDPDDKKYPKRRGVDFYHHYKEDLALFAEMGFKTLRISIAWSRIFPTGEEAEPNEKGLQ 124 Query: 123 FYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYKDLV 182 FYD +F+EM++L IEPIVTLSHYEMPLALSVKYNGWVERKV+D FVKF+NVCF RY+ V Sbjct: 125 FYDRVFAEMKKLNIEPIVTLSHYEMPLALSVKYNGWVERKVVDLFVKFANVCFERYQHDV 184 Query: 183 KYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRIIPG 242 KYWLTFNEIDSI RH F TAGI+P+RCPEGKVEET+YQALHHQFVASALVTADCHRIIPG Sbjct: 185 KYWLTFNEIDSIHRHSFITAGIIPDRCPEGKVEETVYQALHHQFVASALVTADCHRIIPG 244 Query: 243 SQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNIHLQ 302 SQVGCMLT LTTYP+TCHP DVE L +NL YFYADVQVFGEYPP+I MLE+KNIH+Q Sbjct: 245 SQVGCMLTKLTTYPHTCHPNDVEQALKQNLENYFYADVQVFGEYPPMITRMLERKNIHIQ 304 Query: 303 MEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQVDP 362 ME D IL+++TVDF+SFSYYMSLTESA+EGLE+T GNTI GVKNPYLP TDWGWQ+DP Sbjct: 305 MEADDLNILKENTVDFISFSYYMSLTESAQEGLEQTEGNTIRGVKNPYLPSTDWGWQIDP 364 Query: 363 VGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAVEAG 422 VGLKISLIELYDRY+KPL+IVENGMGA D VESDGSIHDDYRINYF+EHF+QM+EA+E G Sbjct: 365 VGLKISLIELYDRYQKPLIIVENGMGAKDVVESDGSIHDDYRINYFKEHFRQMREAIEEG 424 Query: 423 VDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIESNG 482 VDLFGYTSWG+IDIISA TSQMSKRYGFI+VDQDD+GNG+L+RSRKDSFYWY+KVIE+NG Sbjct: 425 VDLFGYTSWGSIDIISAGTSQMSKRYGFIHVDQDDDGNGTLKRSRKDSFYWYQKVIETNG 484 Query: 483 EDLD 486 E LD Sbjct: 485 ESLD 488 >B5XXA4.1 B5XXA4_KLEP3 Beta-glucosidase EC=3.2.1.21 Length = 486 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/486 (70%), Positives = 392/486 (80%), Gaps = 2/486 (0%) Query: 1 MSKG-FPENFLWGGAIAANQAEGAWNVDGKGPSVADIAMYRPHLNVEDYEAHQVVTTGMI 59 MSK P+NFLWG AIAANQAEGAWNVDGKGPSVAD Y+ HL+ DY H V+ + Sbjct: 1 MSKSILPKNFLWGAAIAANQAEGAWNVDGKGPSVADAVAYKAHLSTSDYAGHMAVSDQNV 60 Query: 60 ERAMKDPDVNKYPKRRGIDFYHRYKEDLALFAEMGFKALRVSIAWSRIFPTXXXXXXXXX 119 A++ + YPKRRGIDFYHRYKEDLALFAEMG K LRVSIAWSRIFPT Sbjct: 61 SDALEGKNDQNYPKRRGIDFYHRYKEDLALFAEMGIKVLRVSIAWSRIFPTGEDEQPNEK 120 Query: 120 XLKFYDGLFSEMRRLGIEPIVTLSHYEMPLALSVKYNGWVERKVIDYFVKFSNVCFSRYK 179 L+FY+ +F+EMRRLGIEP+VTLSHYEMPLALS KYNGWV R V+D FV++SNVCF RYK Sbjct: 121 GLQFYENMFTEMRRLGIEPLVTLSHYEMPLALSEKYNGWVHRNVVDAFVRYSNVCFDRYK 180 Query: 180 DLVKYWLTFNEIDSIIRHPFTTAGIVPERCPEGKVEETIYQALHHQFVASALVTADCHRI 239 +LV+YWLTFNEIDSI RHPFTTAG+ E+ G+ + IYQALHHQFVASAL T DCH Sbjct: 181 NLVRYWLTFNEIDSIHRHPFTTAGVREEKSLPGESTQDIYQALHHQFVASALATRDCHEK 240 Query: 240 IPGSQVGCMLTMLTTYPNTCHPKDVEITLMRNLHTYFYADVQVFGEYPPLIETMLEQKNI 299 IPGSQVGCMLT LTTYP TCHP DVE TL +NL YFY+DVQ+ GEYPPLI+ LE +NI Sbjct: 241 IPGSQVGCMLTKLTTYPLTCHPADVEATLKKNLENYFYSDVQIKGEYPPLIKRDLELRNI 300 Query: 300 HLQMEPGDKEILRKHTVDFVSFSYYMSLTESAKEGLERTSGNTITGVKNPYLPVTDWGWQ 359 ++M+P D E LR++TVDF+SFSYYMS+TES + ERT+GNTI GVKNP+LP ++WGWQ Sbjct: 301 KIKMQPDDLETLRRYTVDFLSFSYYMSITESVQSDAERTAGNTIMGVKNPHLPASEWGWQ 360 Query: 360 VDPVGLKISLIELYDRYRKPLLIVENGMGAVDRVESDGSIHDDYRINYFREHFKQMKEAV 419 +DPVGLKISL+ELYDRY+ PL IVENG GA D V DG IHDDYRINYFR HF+QM EAV Sbjct: 361 IDPVGLKISLLELYDRYQIPLFIVENGFGAKDTV-VDGKIHDDYRINYFRAHFEQMIEAV 419 Query: 420 EAGVDLFGYTSWGAIDIISASTSQMSKRYGFIYVDQDDEGNGSLQRSRKDSFYWYKKVIE 479 + GVDL GYTSWG IDIISA TSQM+KRYGFIYVDQDDEGNGSL R RKDSFYWY+KVI Sbjct: 420 KEGVDLIGYTSWGTIDIISAGTSQMTKRYGFIYVDQDDEGNGSLNRLRKDSFYWYRKVIA 479 Query: 480 SNGEDL 485 +NG DL Sbjct: 480 TNGTDL 485 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,983,817,316 Number of extensions: 123917251 Number of successful extensions: 280587 Number of sequences better than 1.0e-05: 2866 Number of HSP's gapped: 269743 Number of HSP's successfully gapped: 3023 Length of query: 486 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 346 Effective length of database: 1,741,754,103 Effective search space: 602646919638 Effective search space used: 602646919638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)