BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0014.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHC6.1 B1DHC6_9BACL Beta-galactosidase EC=3.2.1.23 313 7e-84 C4D8M8.1 C4D8M8_9SPHI Beta-galactosidase 268 2e-70 A7A944.1 A7A944_BIFAD Putative uncharacterized protein 249 2e-64 B6XT34.1 B6XT34_9BIFI Putative uncharacterized protein 241 3e-62 C0BSN0.1 C0BSN0_9BIFI Putative uncharacterized protein 239 9e-62 >B1DHC6.1 B1DHC6_9BACL Beta-galactosidase EC=3.2.1.23 Length = 668 Score = 313 bits (802), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 148/178 (83%), Positives = 158/178 (88%) Query: 1 MSTLRYGVAYYDEYMPYERLDEDIAMMKEAGINTVRIAESTWSTHEPQNGVFDFTSVDRV 60 M+ L YGVAYYDEYMPYERL DI MMKEAGIN VRIAESTWSTHEPQNGVFDF+SVDRV Sbjct: 1 MNKLFYGVAYYDEYMPYERLSTDIEMMKEAGINLVRIAESTWSTHEPQNGVFDFSSVDRV 60 Query: 61 LDAMHAAGIAVIVGTPTYAVPAWLVKEHPDVLAVTPKGPGKYGARQIMDITNPAYLFHAE 120 LDAMH AGI VIVGTPTYAVP W+VKEHPDVLA TP GPG+YGARQIMDITNP+YLF++E Sbjct: 61 LDAMHEAGIHVIVGTPTYAVPTWMVKEHPDVLAETPDGPGRYGARQIMDITNPSYLFYSE 120 Query: 121 RIIRKLISRVCKHPAVIGYQTDNETKHYDTAGENVQLLFVKYMRETFGTLEEINRRFG 178 RIIRKLISRVC HPAVIGYQ DNETKHY T+G NVQL FVKYMRE FGT+E +N FG Sbjct: 121 RIIRKLISRVCGHPAVIGYQVDNETKHYRTSGPNVQLRFVKYMREKFGTVERLNEEFG 178 >C4D8M8.1 C4D8M8_9SPHI Beta-galactosidase Length = 701 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 123/177 (69%), Positives = 148/177 (83%) Query: 2 STLRYGVAYYDEYMPYERLDEDIAMMKEAGINTVRIAESTWSTHEPQNGVFDFTSVDRVL 61 + L YGVAYYDEYMPYERLD+DIAMMKE+GIN VRIAESTW T EPQ+GVF+F+ +DRVL Sbjct: 29 AKLLYGVAYYDEYMPYERLDKDIAMMKESGINVVRIAESTWGTVEPQDGVFNFSHIDRVL 88 Query: 62 DAMHAAGIAVIVGTPTYAVPAWLVKEHPDVLAVTPKGPGKYGARQIMDITNPAYLFHAER 121 +AMH AGI VIVGTPTYAVP WLV+++PDVLA+TP GP +YG RQ MDITNP Y FHAER Sbjct: 89 NAMHKAGIRVIVGTPTYAVPTWLVRKYPDVLAITPTGPNRYGQRQNMDITNPHYRFHAER 148 Query: 122 IIRKLISRVCKHPAVIGYQTDNETKHYDTAGENVQLLFVKYMRETFGTLEEINRRFG 178 +IRK++ V HPA+IGYQ DNETK Y+TAG +VQ FV+Y + FG+L+ +N+ FG Sbjct: 149 VIRKIMEHVKDHPAIIGYQIDNETKAYNTAGPDVQKQFVEYAKAKFGSLDSLNKAFG 205 >A7A944.1 A7A944_BIFAD Putative uncharacterized protein Length = 708 Score = 249 bits (635), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/177 (68%), Positives = 140/177 (79%), Gaps = 4/177 (2%) Query: 6 YGVAYYDEYM---PYERLDEDIAMMKEAGINTVRIAESTWSTHEPQNGVFDFTSVDRVLD 62 +G AYYDEY+ +R+DED+AMMK+AG+N +RIAESTWST EPQ GVFDFT VDR LD Sbjct: 11 FGAAYYDEYLMMKGIDRIDEDMAMMKDAGLNVIRIAESTWSTCEPQPGVFDFTYVDRALD 70 Query: 63 AMHAAGIAVIVGTPTYAVPAWLVKEHPDVLAVTPKGPGKYGARQIMDITNPAYLFHAERI 122 A AGI VIVGTPTYAVP+WLVK P VLAVTP G GKYGARQIMDI N Y F+ ER+ Sbjct: 71 AAQRAGIDVIVGTPTYAVPSWLVKLDPSVLAVTPNGQGKYGARQIMDIVNATYRFYGERV 130 Query: 123 IRKLISRVCKHPAVIGYQTDNETKHYDTAGENVQLLFVKYMRETF-GTLEEINRRFG 178 IRKLIS V HPAVIGYQ DNETK+YD+ E++Q LFVKY+RE F G L+E+N FG Sbjct: 131 IRKLISHVADHPAVIGYQVDNETKYYDSVSEDMQRLFVKYLREKFHGDLDELNHHFG 187 >B6XT34.1 B6XT34_9BIFI Putative uncharacterized protein Length = 708 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 119/179 (66%), Positives = 136/179 (75%), Gaps = 4/179 (2%) Query: 4 LRYGVAYYDEYM---PYERLDEDIAMMKEAGINTVRIAESTWSTHEPQNGVFDFTSVDRV 60 + +G AYYDEY+ +R+DED+ MMKEAG+N +RIAESTWST EPQ G FDFT VDR Sbjct: 9 ILFGAAYYDEYLMMKGIDRVDEDMRMMKEAGLNVIRIAESTWSTCEPQPGAFDFTYVDRA 68 Query: 61 LDAMHAAGIAVIVGTPTYAVPAWLVKEHPDVLAVTPKGPGKYGARQIMDITNPAYLFHAE 120 LDA AGI VIVGTPTYAVP+WLVK P VLAVTP G GKYGARQIMDI N Y F+ E Sbjct: 69 LDAAQRAGIDVIVGTPTYAVPSWLVKIDPSVLAVTPNGEGKYGARQIMDIVNATYRFYGE 128 Query: 121 RIIRKLISRVCKHPAVIGYQTDNETKHYDTAGENVQLLFVKYMRETF-GTLEEINRRFG 178 R+IRKLIS V HPAVIGYQ DNETK+YD+ ++Q LFVKY+ E F G L E+N FG Sbjct: 129 RVIRKLISHVADHPAVIGYQVDNETKYYDSVSNDMQRLFVKYLHEKFNGDLNELNHHFG 187 >C0BSN0.1 C0BSN0_9BIFI Putative uncharacterized protein Length = 708 Score = 239 bits (611), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 118/179 (65%), Positives = 135/179 (75%), Gaps = 4/179 (2%) Query: 4 LRYGVAYYDEYM---PYERLDEDIAMMKEAGINTVRIAESTWSTHEPQNGVFDFTSVDRV 60 + +G AYYDEY+ +R+DED+ MMKEAG+N +RIAESTWST EPQ G FDFT VDR Sbjct: 9 ILFGAAYYDEYLMMKGIDRVDEDMRMMKEAGLNVIRIAESTWSTCEPQPGAFDFTYVDRA 68 Query: 61 LDAMHAAGIAVIVGTPTYAVPAWLVKEHPDVLAVTPKGPGKYGARQIMDITNPAYLFHAE 120 LDA GI VIVGTPTYAVP+WLVK P VLAVTP G GKYGARQIMDI N Y F+ E Sbjct: 69 LDAAQRVGIDVIVGTPTYAVPSWLVKIDPSVLAVTPNGEGKYGARQIMDIVNATYRFYGE 128 Query: 121 RIIRKLISRVCKHPAVIGYQTDNETKHYDTAGENVQLLFVKYMRETF-GTLEEINRRFG 178 R+IRKLIS V HPAVIGYQ DNETK+YD+ ++Q LFVKY+ E F G L E+N FG Sbjct: 129 RVIRKLISHVADHPAVIGYQVDNETKYYDSVSNDMQRLFVKYLHEKFHGDLNELNHHFG 187 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,278,228,980 Number of extensions: 51578626 Number of successful extensions: 177249 Number of sequences better than 1.0e-05: 378 Number of HSP's gapped: 176913 Number of HSP's successfully gapped: 378 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)