BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0013.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGX7.1 B1DGX7_9BACL Binding-protein-dependent transport system... 323 1e-86 C4G513.1 C4G513_ABIDE Putative uncharacterized protein 270 7e-71 Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system pe... 244 5e-63 C1I5S0.1 C1I5S0_9CLOT Binding-protein-dependent transport system... 236 1e-60 B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport system... 234 8e-60 >B1DGX7.1 B1DGX7_9BACL Binding-protein-dependent transport systems inner membrane component Length = 274 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 148/261 (56%), Positives = 202/261 (77%) Query: 6 LCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHSTVNXXX 65 L V AV FPIY+AI+NS KT+GE++ S + LP+ L F+NY++AF K N+L S N Sbjct: 14 LAVLAVYFLFPIYMAIVNSFKTEGEVYNSVLGLPSALKFDNYTEAFKKANMLRSGWNTVI 73 Query: 66 XXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKALHVS 125 C++LAGYKLSRT RLS+ IF LF+ASML+PF +IM+ LT+MA+ L + Sbjct: 74 VTVTGIVGIVACSSLAGYKLSRTRSRLSSWIFMLFVASMLIPFQTIMVTLTKMARDLGLQ 133 Query: 126 GSTYGLALIYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPLLVPIT 185 GS GL ++ GLGVNMAIFLYHGFVK IPREL+E+A MDGCGE++ FF IIFPLL+PIT Sbjct: 134 GSPLGLGVVCAGLGVNMAIFLYHGFVKGIPRELDESASMDGCGEWKGFFLIIFPLLMPIT 193 Query: 186 VTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILAALVLTALPVI 245 TI +L+ LW+WNDFLLP+L+L D +YTL+L+ N FG+Y+++W+LILA+L+L+++P++ Sbjct: 194 FTIVVLNLLWLWNDFLLPVLLLNDYRQYTLVLTINMFFGKYSRDWALILASLILSSIPIV 253 Query: 246 VIYGFFQKFIMQGIAEGAIKG 266 +I+ FFQ++I+QGI EGA+KG Sbjct: 254 LIFAFFQRWIIQGITEGAVKG 274 >C4G513.1 C4G513_ABIDE Putative uncharacterized protein Length = 276 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 137/265 (51%), Positives = 180/265 (67%) Query: 2 ITLFLCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHSTV 61 I+ FL + A I+ P+ +A INS KT E+ + ++ P K FENY DK++ S Sbjct: 12 ISGFLIIIAFIALLPLLMAFINSFKTNQELLINVMSWPEKFSFENYLHTIDKMHYGRSFT 71 Query: 62 NXXXXXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKA 121 N ++LAG++L RT +LS + LFI SML+PF SIMIPL R++ Sbjct: 72 NTAILALFSIFFIVLFSSLAGWRLCRTKTKLSRFLLRLFIFSMLIPFSSIMIPLYRVSLV 131 Query: 122 LHVSGSTYGLALIYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPLL 181 L++ S GL+ IY GLGV+MAIFLYHGFVK IP E+EEAA +DG Q FFRI+FP+L Sbjct: 132 LNIKNSLIGLSFIYAGLGVSMAIFLYHGFVKGIPIEMEEAAAIDGGSLIQIFFRIVFPML 191 Query: 182 VPITVTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILAALVLTA 241 PIT TI I + LW+WNDFLLPL++++D KYTL+LSTNTLFG+Y+ +W+ IL AL+L A Sbjct: 192 KPITATIIITNVLWVWNDFLLPLIIVSDNKKYTLLLSTNTLFGQYSSDWTAILGALILAA 251 Query: 242 LPVIVIYGFFQKFIMQGIAEGAIKG 266 PVIV Y FQK I++GI +GAIKG Sbjct: 252 FPVIVFYIIFQKQILKGITDGAIKG 276 >Q2BAB3.1 Q2BAB3_9BACI Multiple sugar-binding transport system permease Length = 275 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 115/250 (46%), Positives = 170/250 (68%) Query: 16 PIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHSTVNXXXXXXXXXXXXX 75 P Y +NSVK+ E+ A P ++ F NYS+ ++ IN + N Sbjct: 26 PFYFVAVNSVKSFAEILLDAAAFPKEVLFANYSKVWEIINFPRAFWNSLIITVLSNIGLV 85 Query: 76 FCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKALHVSGSTYGLALIY 135 +++A +K+ RT GR S +F LF+++M++PF ++MIPL ++ AL+++ S GL ++Y Sbjct: 86 IISSMAAWKMVRTPGRFSKILFILFVSAMVIPFQTVMIPLMKLGGALNMTNSIPGLIMMY 145 Query: 136 IGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPLLVPITVTIAILDFLW 195 G GV +++FLYHGFVK++PRE+EE+A +DGC +F F+RI+FPLL PITVT+ IL+ LW Sbjct: 146 FGFGVPLSLFLYHGFVKTVPREIEESALIDGCSQFGVFWRIVFPLLKPITVTVVILNTLW 205 Query: 196 IWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILAALVLTALPVIVIYGFFQKFI 255 IWNDFLLPLL+L DA T+ L+T++ F +Y K+W + LAALVL PVI+ + F QK I Sbjct: 206 IWNDFLLPLLVLQDAELRTIPLATSSFFAQYTKQWDMGLAALVLGITPVIIFFLFLQKHI 265 Query: 256 MQGIAEGAIK 265 ++GIA G+IK Sbjct: 266 IKGIASGSIK 275 >C1I5S0.1 C1I5S0_9CLOT Binding-protein-dependent transport system inner membrane component Length = 291 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/270 (41%), Positives = 178/270 (65%), Gaps = 9/270 (3%) Query: 3 TLFLCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHSTVN 62 TL C+ +I P YL +INS K++ E+F + LP+K +F NY+ A +++N+ + +N Sbjct: 24 TLGWCL-LIIYMVPFYLMLINSFKSRREIFDNTTGLPSKWNFSNYTDAIERMNMSSAFIN 82 Query: 63 XXXXXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKAL 122 +++A + L+RT + S IF LF+A+M+VPF ++M+PL + + Sbjct: 83 SLIITALSIILIVLFSSMAAWTLARTKTKTSKVIFYLFVAAMIVPFQAVMLPLVKWMGMM 142 Query: 123 HVS-------GSTYGLALIYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFR 175 H+ G+ YGL +YIG G +M+IFLYHGF+ +IP E+EEAA +DGC ++Q +++ Sbjct: 143 HIDAINFNMLGTHYGLIFMYIGFGSSMSIFLYHGFINNIPLEVEEAAIIDGCNKWQLYYK 202 Query: 176 IIFPLLVPITVTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILA 235 I+FPLL PITVT+ +L+ +WIWNDFLLP L + + T+ L+ N FG ++K+W L +A Sbjct: 203 IVFPLLKPITVTVMVLNGIWIWNDFLLPFLTI-NGKINTIPLAMNNFFGAFSKQWELAMA 261 Query: 236 ALVLTALPVIVIYGFFQKFIMQGIAEGAIK 265 AL+L +P+I+ Y F QK+I++GI +G+IK Sbjct: 262 ALILAVIPIIIFYFFVQKYIIKGIVQGSIK 291 >B3K4S4.1 B3K4S4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 234 bits (596), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 111/261 (42%), Positives = 167/261 (63%) Query: 6 LCVGAVISFFPIYLAIINSVKTQGEMFASFIALPTKLHFENYSQAFDKINLLHSTVNXXX 65 + + A++ P Y +NSVKT GE+ LPT + NYS+A+D N + N Sbjct: 18 MVIVALLFLVPFYFLFVNSVKTFGELLTDSAGLPTTFEWSNYSRAWDITNFPQAFWNSLV 77 Query: 66 XXXXXXXXXXFCAALAGYKLSRTSGRLSAAIFSLFIASMLVPFHSIMIPLTRMAKALHVS 125 +A+ Y++ R + R + +F+LF+A+M++PF SIMIPL ++ L ++ Sbjct: 78 VTVASNLLLAMLSAMTAYQMVRRNTRFNQIMFALFVAAMVIPFQSIMIPLVKVTATLGIN 137 Query: 126 GSTYGLALIYIGLGVNMAIFLYHGFVKSIPRELEEAARMDGCGEFQTFFRIIFPLLVPIT 185 S YGL + Y+G GV +++FL+HGFVKSIP E+EEAA +DG + FFR++FPL+ P+ Sbjct: 138 NSLYGLIICYLGFGVPLSVFLFHGFVKSIPMEIEEAATVDGSSGYGVFFRVVFPLMKPMF 197 Query: 186 VTIAILDFLWIWNDFLLPLLMLTDANKYTLILSTNTLFGEYNKEWSLILAALVLTALPVI 245 VT+ IL+ LWIWND+LLP L+L A T+ ++T FG+Y K+W L L ALVL +PVI Sbjct: 198 VTVIILNTLWIWNDYLLPSLILQSAELRTIPIATFAFFGQYTKQWDLALPALVLGIMPVI 257 Query: 246 VIYGFFQKFIMQGIAEGAIKG 266 + + QK+I++GI +GA+KG Sbjct: 258 LFFLAMQKYIIEGITQGAVKG 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,368,977,592 Number of extensions: 51252532 Number of successful extensions: 211942 Number of sequences better than 1.0e-05: 5959 Number of HSP's gapped: 204990 Number of HSP's successfully gapped: 5959 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)