BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0012.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGX8.1 B1DGX8_9BACL Binding-protein-dependent transport system... 375 e-102 C4G514.1 C4G514_ABIDE Putative uncharacterized protein 327 6e-88 C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport system... 260 1e-67 B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport system... 254 8e-66 A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system pe... 249 2e-64 >B1DGX8.1 B1DGX8_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/291 (60%), Positives = 229/291 (78%), Gaps = 2/291 (0%) Query: 6 YKNVLSLLAFVAPAFIIYLLFLLIPTIGGMYYSFTDWNGLNPNYSFTGLGNFIEALREDP 65 YK SL+ FV PAF++YLLFL+IP + G YYSFTDWNGLN Y F G+ NF+EALR+D Sbjct: 5 YKATFSLILFVLPAFVLYLLFLVIPMLQGSYYSFTDWNGLNKTYGFVGIQNFVEALRDDR 64 Query: 66 DFVNSLLFTLKYVLFMIVLQNVFALVLAVFIETKTRTKGFFRTIFFMPNMISTIIGAFMW 125 F +++ FT KYV+F +V QNV AL+LA+ IE++TR KG FRTIFFMPNM+S II FMW Sbjct: 65 YFRSAIWFTAKYVIFAVVFQNVVALLLAILIESRTRAKGLFRTIFFMPNMLSVIISTFMW 124 Query: 126 TFVFSQVLPQIAEKTAMSFLDQLWIGDPKVSFYSIIIVSLWHGVGYMMIIYLAALQGVPQ 185 FVFS+V+P ++E FLD W+GDP+VSF+SI++VSLW GVG +M+IY++A+QG+P Sbjct: 125 VFVFSKVIPALSEYAVFKFLDLSWLGDPQVSFWSILLVSLWGGVGTLMLIYMSAIQGIPL 184 Query: 186 SLKEAAVIDGASPFQTFRKVTLPMITHAVTICFFLTLNGTFKVFEAVYGLTGGGPGRSTQ 245 LKEAA+IDGA+PF+ R +TLP+I HA+TIC FLTLN +FKV++ VY LTGGGPGR TQ Sbjct: 185 HLKEAAIIDGATPFRMLRYITLPLIAHALTICIFLTLNSSFKVYDLVYALTGGGPGRGTQ 244 Query: 246 VITMNIYEEAFSNNFRYGYASAKSVILFVIILXXXXTFIQIGVMKRKEVEA 296 VITMNI EEA+ N RYGYASAK++I + ++ T IQ+ +MK++EVEA Sbjct: 245 VITMNILEEAYQGNNRYGYASAKAII--LFLIILVITMIQVTMMKKREVEA 293 >C4G514.1 C4G514_ABIDE Putative uncharacterized protein Length = 292 Score = 327 bits (839), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 155/291 (53%), Positives = 213/291 (73%), Gaps = 4/291 (1%) Query: 5 GYKNVLSLLAFVAPAFIIYLLFLLIPTIGGMYYSFTDWNGLNPNYSFTGLGNFIEALRED 64 G KN++ LL F APA +Y+LF L P + GM+Y+ T+WNGL Y F GL NF+E + D Sbjct: 5 GKKNII-LLLFCAPALTVYILFKLYPAVTGMFYALTNWNGLKKEYEFIGLLNFVE-IFSD 62 Query: 65 PDFVNSLLFTLKYVLFMIVLQNVFALVLAVFIETKTRTKGFFRTIFFMPNMISTIIGAFM 124 F NS+LFT KY + M+++ N+ AL LAV +E++ RTK FRT+ +MPNMIS +IG +M Sbjct: 63 HYFWNSVLFTFKYTIAMVIVSNIVALALAVAVESRRRTKALFRTVLYMPNMISLVIGGYM 122 Query: 125 WTFVFSQVLPQIAEKTAMSFLDQLWIGDPKVSFYSIIIVSLWHGVGYMMIIYLAALQGVP 184 W F+ ++V +A+ FL+ WIG+P+ SF++II+VS W VG++MIIY+AALQGVP Sbjct: 123 WMFILTKVFYYLADSWGWRFLEHSWIGNPQFSFFAIILVSSWGSVGFLMIIYMAALQGVP 182 Query: 185 QSLKEAAVIDGASPFQTFRKVTLPMITHAVTICFFLTLNGTFKVFEAVYGLTGGGPGRST 244 +LKEAA IDGAS +Q F+K+ LP+I HAVTIC F +LN F+VF+ +Y LTGGGPGR+T Sbjct: 183 ANLKEAAAIDGASSWQIFQKIILPLINHAVTICIFWSLNAGFQVFDVIYTLTGGGPGRAT 242 Query: 245 QVITMNIYEEAFSNNFRYGYASAKSVILFVIILXXXXTFIQIGVMKRKEVE 295 Q + +NIYEEAF N RYGYA+AKS ILF+I+L T +Q+ + +++VE Sbjct: 243 QSVAVNIYEEAFRGNIRYGYATAKSTILFIIVL--IITALQLNITGKRDVE 291 >C4L2X1.1 C4L2X1_EXISA Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 129/293 (44%), Positives = 186/293 (63%), Gaps = 3/293 (1%) Query: 4 KGYKNVLSLLAFVAPAFIIYLLFLLIPTIGGMYYSFTDWNGLNPNYSFTGLGNFIEALRE 63 + +K S +AFV PAF+ ++ +LIP G+YYSFTDWNG+ +F GL N+ E Sbjct: 12 RNWKKPASFIAFVGPAFLAFVAIVLIPFFNGIYYSFTDWNGVTGELNFVGLDNYHRLFFE 71 Query: 64 DPDFVNSLLFTLKYVLFMIVLQNVFALVLAVFIETKTRTKGFFRTIFFMPNMISTIIGAF 123 D F S T KY L ++L N+ LA+ + +T+ F RTIFFMPN+I +I F Sbjct: 72 DEQFRASFWITTKYTLVSVLLTNIVGFSLALLLTMNIKTRNFLRTIFFMPNLIGGLILGF 131 Query: 124 MWTFVFSQVLPQIAEKTAMSFLDQLWIGDPKVSFYSIIIVSLWHGVGYMMIIYLAALQGV 183 +W F++ + I T S + W+GD + +F+ I+IV++W G GY+M+IY+AALQ V Sbjct: 132 IWQFIYVKGFASIGALTGWSLFELPWLGDAQTAFWGIVIVAIWQGGGYVMVIYIAALQNV 191 Query: 184 PQSLKEAAVIDGASPFQTFRKVTLPMITHAVTICFFLTLNGTFKVFEAVYGLTGGGPGRS 243 P L EAA IDGA+ + R +TLPMI ++TIC FLT++ +FKVF+ LT GGP +S Sbjct: 192 PTDLMEAARIDGANRLKMLRHITLPMIMPSITICLFLTISWSFKVFDTNLSLTNGGPFKS 251 Query: 244 TQVITMNIYEEAFSNNFRYGYASAKSVILFVIILXXXXTFIQIGVMKRKEVEA 296 T+++ +NIY E+F NN YG SAK+VI F+++ T Q+ V K++EVEA Sbjct: 252 TEMLALNIYTESFVNN-NYGLGSAKAVIFFLVVAAITVT--QVYVTKKREVEA 301 >B1YJN1.1 B1YJN1_EXIS2 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 124/293 (42%), Positives = 183/293 (62%), Gaps = 3/293 (1%) Query: 4 KGYKNVLSLLAFVAPAFIIYLLFLLIPTIGGMYYSFTDWNGLNPNYSFTGLGNFIEALRE 63 K K L FV P F+++ + +L+P G+ YSFTDWNG+ ++ G N++ Sbjct: 7 KKVKRGLEFWMFVGPVFLVFAVIVLVPFFNGVMYSFTDWNGITGELNWIGFDNYVRLFTV 66 Query: 64 DPDFVNSLLFTLKYVLFMIVLQNVFALVLAVFIETKTRTKGFFRTIFFMPNMISTIIGAF 123 D F S T KY + +VL N+ +LA + RT+ F RTIFFMPN+I +I F Sbjct: 67 DEQFQQSFWLTTKYTVVAVVLTNLVGFILAFLLTQNIRTRNFLRTIFFMPNLIGGLILGF 126 Query: 124 MWTFVFSQVLPQIAEKTAMSFLDQLWIGDPKVSFYSIIIVSLWHGVGYMMIIYLAALQGV 183 +W F++ + I E T S + W+GD + F+ I+IVS+W G GY+M+IY+AALQ V Sbjct: 127 VWQFIYVKGFASIGELTGWSLFELPWLGDARTGFWGIVIVSIWQGGGYIMVIYIAALQNV 186 Query: 184 PQSLKEAAVIDGASPFQTFRKVTLPMITHAVTICFFLTLNGTFKVFEAVYGLTGGGPGRS 243 PQ L EAA IDGA+ T R +T+P+I +VTIC FLT++ +FK+F+ LT GGP +S Sbjct: 187 PQELIEAAKIDGANRLSTLRNITIPLIMPSVTICLFLTISWSFKLFDTNLSLTNGGPFKS 246 Query: 244 TQVITMNIYEEAFSNNFRYGYASAKSVILFVIILXXXXTFIQIGVMKRKEVEA 296 T+++ +NIY+E+F+NN G SAK++I FV++ T Q+ + K++EVEA Sbjct: 247 TEMLALNIYKESFTNN-NLGLGSAKAIIFFVVVAAITVT--QVYLTKKREVEA 296 >A6CLU6.1 A6CLU6_9BACI Multiple sugar-binding transport system permease Length = 313 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 186/291 (63%), Gaps = 3/291 (1%) Query: 6 YKNVLSLLAFVAPAFIIYLLFLLIPTIGGMYYSFTDWNGLNPNYSFTGLGNFIEALREDP 65 YK++L+ AFV PA + +L+ +IP + G+YYSFT WNG++ + G+ N+ + +DP Sbjct: 26 YKSILTYAAFVGPALLFFLVIQIIPFLMGLYYSFTSWNGVSSAVEWVGIENYKKIFSDDP 85 Query: 66 DFVNSLLFTLKYVLFMIVLQNVFALVLAVFIETKTRTKGFFRTIFFMPNMISTIIGAFMW 125 F NS +FT K++ +++ N+ A+ + +T+ RT+FF+PN+I ++ F+W Sbjct: 86 VFFNSFMFTTKFMFAAVLISNLLGFSFALLLNAALKTRNILRTVFFIPNVIGGLLLGFIW 145 Query: 126 TFVFSQVLPQIAEKTAMSFLDQLWIGDPKVSFYSIIIVSLWHGVGYMMIIYLAALQGVPQ 185 F+F + + T + F W+GD +F+ I+IV W GYMM+IY+AALQGV Sbjct: 146 QFIFVKGFASLGNMTDIGFFKMPWLGDETTAFWGIVIVFAWQISGYMMVIYVAALQGVDN 205 Query: 186 SLKEAAVIDGASPFQTFRKVTLPMITHAVTICFFLTLNGTFKVFEAVYGLTGGGPGRSTQ 245 SL EAA +DGAS + ++ +P+I A TICFFLT++ FK+F+ LTGGGP STQ Sbjct: 206 SLLEAAKMDGASAWAVLTRIIIPLILPAFTICFFLTISMAFKIFDLNISLTGGGPFNSTQ 265 Query: 246 VITMNIYEEAFSNNFRYGYASAKSVILFVIILXXXXTFIQIGVMKRKEVEA 296 + +NIY+EAF NN RYG +AKS++ FV++ T +Q+ V K+KEVEA Sbjct: 266 SVAINIYQEAFQNN-RYGLGTAKSILFFVVV--AIFTTVQVMVTKKKEVEA 313 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,657,496,369 Number of extensions: 67010695 Number of successful extensions: 254472 Number of sequences better than 1.0e-05: 6342 Number of HSP's gapped: 244737 Number of HSP's successfully gapped: 6358 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)