BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0009.p (585 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGY1.1 B1DGY1_9BACL Histidine kinase internal region 343 2e-92 C4G517.1 C4G517_ABIDE Putative uncharacterized protein 188 1e-45 A6CLU9.1 A6CLU9_9BACI Putative uncharacterized protein 184 2e-44 B1D7N6.1 B1D7N6_9BACL Integral membrane sensor signal transducti... 183 4e-44 C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein 182 1e-43 >B1DGY1.1 B1DGY1_9BACL Histidine kinase internal region Length = 597 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 200/600 (33%), Positives = 326/600 (54%), Gaps = 27/600 (4%) Query: 1 MFAKWMMKLSG----PFRRSIRNKLILTMILLATLPIVAITGLAAENSRRSMETEVINTN 56 M KW+ G PF+ S+R KL+L M+L+A LP+ +T A + ++ S+ +EVI +N Sbjct: 1 MKTKWVRNTLGGIVRPFQISLRYKLMLLMVLIAVLPLSLVTLFATKTTKHSLASEVIRSN 60 Query: 57 LSNMKWTGVYLGDQFTQLNNLIYTVMISPHL-----SDYLASAEEPNLSSQFTAQRNIID 111 S M+W Y ++F QL + Y++++ L + S P+ +Q+T ID Sbjct: 61 ESRMEWAAKYFDEKFDQLQAVSYSLLLDSTLFPNATGGAIQSEGTPSFVNQYT-----ID 115 Query: 112 TLTNLFYSAGNHVVGVEMYLKEYNKLFTVNA----SRNDIQSPAVVPAPYKQLFDRDKDF 167 L +L+ + ++ V +YLK N+L+ V+ S + +++P V Q + Sbjct: 116 KLKSLYSANNKNIAQVALYLKSQNRLYVVDKDAGISTDQLKTPQVDWGAIGQSHESLNLL 175 Query: 168 MITTDSSDGTKFQLIRSINRFENQEKLGGISLQIRWGVLDQTLDLLGRGNEHTVFIAGAD 227 + ++ F ++RS+NRF ++E LGG+ L++RW +++ L+++ + VF+A AD Sbjct: 176 LNNGQNT----FSIVRSMNRFPDREVLGGVRLEVRWKMMNSVLEMIRSESNSEVFVADAD 231 Query: 228 GKVLYQPWGSAPASGTLSRIADTGE--SQGYFRSDHEYVFYNTIDPVGLKLVTVIPDSFI 285 G V+Y P+ + A E QGY S ++FY + +V IP ++ Sbjct: 232 GNVMYNPYSERITTDQEMVKAALAEPDGQGYTESKRGFLFYQPSVSGQVWVVKFIPIEYV 291 Query: 286 NQSAMATMNFXXXXXXXXXXXXXXXXXXXXWRLATPIVNLARYVQGFGMMK-EREVRLSN 344 + A +T+NF + PI+ L + ++ + E ++R Sbjct: 292 TEGASSTLNFSLITALAFAIVAIAASVLIAYITTRPIIRLTQSMKAVEIQNFEVDIR-EP 350 Query: 345 RVDEIGLLETKLDQMSHRIREHIRTEYIISLEKKSSELKALQAQINPHFLQNTLQMIGSM 404 R DEIG LE + + M RI+E I+TEY ++EK+++++KA+QAQINPHFL N LQ IG + Sbjct: 351 RSDEIGTLERRFNSMLSRIKELIQTEYKATIEKRTAQVKAMQAQINPHFLHNALQAIGGI 410 Query: 405 LFKNSPAESYGVLRSLSDMFRYIIREPEDLAPLRAELNHLNNYMQIQQQRFAARLDYRLQ 464 + E +R++SD+FRY IR DL + EL H NY+QIQ+ RF + ++ R+ Sbjct: 411 ALSRNVPEINDHVRAISDLFRYTIRMKSDLVTIADELEHARNYLQIQKLRFQSMIEIRID 470 Query: 465 VDEGALNSLIPKLTLQPITENAFFHGLERQEGPWELEVKVSRTGEDTLIVIRDNGVGLEP 524 DE L IPK +LQPI EN F HGLE + W + ++V + ++ I I DNG+G++ Sbjct: 471 ADEECLGCRIPKFSLQPIVENCFVHGLEGKMDAWTISIRVEKVLDEIEIDIADNGMGIDE 530 Query: 525 DKLAELQRRLTSRSGKLWTYGERIGLSNVASRIHLHFGGSYGIQVESREGQGTTVTVTIP 584 +LAE++R+L S+ GE +G+SNV +RI L FG YG+ + S GTTV + IP Sbjct: 531 ARLAEIRRQL-SQPADGQENGEGMGISNVNARIKLLFGDEYGLFISSEWNAGTTVKLLIP 589 >C4G517.1 C4G517_ABIDE Putative uncharacterized protein Length = 555 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 113/375 (30%), Positives = 191/375 (50%), Gaps = 8/375 (2%) Query: 218 EHTVFIAGADGKVLYQPWGS-----APASGTLSRIADTGESQGYFRSDHEYVFYNTIDPV 272 E T+ I ++ + +G+ + R + Q FR D ++ FY ++ Sbjct: 176 EETILILNDQNDLIAENYGTDWKLNEKTVENIRRELAENKHQETFR-DGQFWFYRPVNSG 234 Query: 273 GLKLVTVIPDSFINQSAMATMNFXXXXXXXXXXXXXXXXXXXXWRLATPIVNLARYVQGF 332 ++L+ +P+ I + + T+ ++ PI L+ ++ Sbjct: 235 KIQLILSLPNQTIINALLPTITVSIAAAVLAILSSIFCSITYSKSVSKPIQALSNEMKTL 294 Query: 333 GMMKEREVRLSNRVDEIGLLETKLDQMSHRIREHIRTEYIISLEKKSSELKALQAQINPH 392 + + + NR DEIG+L+ M R +E I +Y LEK++++L+ALQ+QINPH Sbjct: 295 TLNEYHIMPHENRQDEIGILQDSFHYMIARNKELITQQYQAKLEKRNAQLRALQSQINPH 354 Query: 393 FLQNTLQMIGSMLFKNSPAESYGVLRSLSDMFRYIIREPEDLAPLRAELNHLNNYMQIQQ 452 F+ NTLQ+IG M + E Y V +LSD+ RY + + + L E+ +L +Y+ IQ Sbjct: 355 FMYNTLQVIGGMALEKEAPEIYSVTIALSDILRYSLNFSQKMVSLEEEIEYLKSYIMIQN 414 Query: 453 QRFAARLDYRLQVDEGALNSLIPKLTLQPITENAFFHGLERQEGPWELEVKVSRT-GEDT 511 +RF R+ ++ + LIPKL LQPI EN+F HGL + G W L ++ T D Sbjct: 415 ERFGGRIQLDFRLAPTTVECLIPKLILQPIAENSFEHGLPNKPGTWILTIESEITENNDL 474 Query: 512 LIVIRDNGVGLEPDKLAELQRRLTSRSGKLWTYGERIGLSNVASRIH-LHFGGSYGIQVE 570 L+ I+DNG G+EPD+L+++++ + + K+ IGL NV R+ L ++GI + Sbjct: 475 LVRIKDNGTGIEPDRLSQIKKMIDGDASKVLITDSHIGLLNVHMRVKLLSSNENHGISII 534 Query: 571 SREGQGTTVTVTIPL 585 S GTTV + +P+ Sbjct: 535 STPETGTTVNICMPV 549 >A6CLU9.1 A6CLU9_9BACI Putative uncharacterized protein Length = 603 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 169/612 (27%), Positives = 283/612 (46%), Gaps = 64/612 (10%) Query: 14 RRSIRNKLILTMILLATLPI---VAITGLAAENSRRSMETEVINTNLSNMKWTG-VYLGD 69 + SIRNKLI+ +++ +P + IT L +NS +E EV+ + SN+ + G + L + Sbjct: 3 KNSIRNKLIVLLMITTIIPFGSSIIITYLYTKNS---IEEEVVQES-SNLLYQGKINLEN 58 Query: 70 QFTQLNNLIYTVMISPHL----------SDYLASAEEPNLSSQFTAQRNIIDTLTNLF-- 117 +L+ L ++ +P SDYL N+ F I +T F Sbjct: 59 YINELSGLTLSLYNNPDFINYMRSPQSESDYLTIGLVKNVVQTFLYTEKTIKEVTITFAD 118 Query: 118 ----YSAGNH-VVGVEMYLKEYNKLFTVNASRNDIQSPA---VVPAPYKQLFDRDKDFMI 169 SA H V M + + A+R SP + PA +Q +R + I Sbjct: 119 DDRVISATKHSTVVFSMREGASEQEALMKAAR----SPYNLNIAPAYPQQENERKRSKSI 174 Query: 170 TTDSSDGTKFQLIRSINRFENQEKLGGISLQIRWGVLDQTLDL---LGRGNEHTVFIAGA 226 T + R++ E LG ISL+I + D+ LDL L + ++ Sbjct: 175 AT---------IHRALINIPADEVLGYISLEI---LPDKILDLSKNLYNTDTEEFYLLTP 222 Query: 227 DGKVLYQPWGSAPASGT----LSRIADTGESQGYFR----SDHEYVFYNTIDPV--GLKL 276 +G+V+Y G + + I D E+ G S + + Y+ + P G L Sbjct: 223 EGEVIYSSDGDTSLNKRSQEWIQEITDGNETSGTLEWQKDSFNGVMMYDRLSPSAGGWIL 282 Query: 277 VTVIPDSFINQSAMATMNFXXXXXXXXXXXXXXXXXXXXWRLATPIVNLARYVQGFGMMK 336 V + + + +SA + +++ +PI L +Q ++ Sbjct: 283 VKRVSYANLYESAFSVAKINILFGFVGLSLVILSILFVSFKITSPIRVLLHNIQ---QVE 339 Query: 337 EREVRLSNR---VDEIGLLETKLDQMSHRIREHIRTEYIISLEKKSSELKALQAQINPHF 393 + E+++ ++ DEIGLL ++ QM RI I EY + LE K+++LK LQ+QINPHF Sbjct: 340 KGEMKIESQSFGTDEIGLLGSRFQQMIGRINHLINREYKLELENKTNQLKVLQSQINPHF 399 Query: 394 LQNTLQMIGSMLFKNSPAESYGVLRSLSDMFRYIIREPEDLAPLRAELNHLNNYMQIQQQ 453 L N LQ IG++ KN + Y ++ LS + RY + ED+ L E+N+ Y+ +Q++ Sbjct: 400 LYNALQSIGTIALKNKVPQIYTLITHLSKIMRYGMDMEEDIVSLNKEINYTRAYLLLQKE 459 Query: 454 RFAARLDYRLQVDEGALNSLIPKLTLQPITENAFFHGLERQEGPWELEVKVSRTGEDTLI 513 RF LDY ++V+EG +PK+ LQPI EN F HG + +EG + + ++ +I Sbjct: 460 RFGDHLDYSIEVEEGLKEVKVPKMLLQPIIENYFKHGFDIREGIGRIRLNCFSEHDELVI 519 Query: 514 VIRDNGVGLEPDKLAELQRRLTSRSGKLWTYGERIGLSNVASRIHLHFGGSYGIQVESRE 573 + DNG G+ KL E+ + IGL NV R+ L++ +++++ E Sbjct: 520 TVEDNGAGVTAQKLQEIYEHFQTDIKNTTGENTSIGLKNVFVRLKLYYNQQASLELQNLE 579 Query: 574 GQGTTVTVTIPL 585 G G VT+ +P+ Sbjct: 580 G-GFRVTMRLPV 590 >B1D7N6.1 B1D7N6_9BACL Integral membrane sensor signal transduction histidine kinase Length = 610 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 124/417 (29%), Positives = 200/417 (47%), Gaps = 10/417 (2%) Query: 179 FQLIRSINRFENQEKLGGISLQIRWGVLDQTLDLLGRGNEHTVFIAGADGKVLYQPWGSA 238 F L R I R + E +G +S+ ++ L+Q L +E ++I + G Sbjct: 187 FTLRRPIIRTPSDEVIGYLSMDVKSDELNQICRQLTMSSEEQLYIIDRSRNFVCSVNGQE 246 Query: 239 P------ASGTLSRIADTGESQGYFRSDHEYVFYNTIDPVGLKLVTV--IPDSFINQSAM 290 L+ + G + +S V Y+T+ + V V +P S++ +SA Sbjct: 247 DQDRLKWTDQVLASKQENGVIKWQDQSFSGIVIYDTLSTNYMDWVVVKQLPYSYLYESAT 306 Query: 291 ATMNFXXXXXXXXXXXXXXXXXXXXWRLATPIVNLARYVQGFGMMKEREVRLSNRVDEIG 350 A ++ PI L ++ V +R DEIG Sbjct: 307 AIRTINTSVIAIFMVLAVIASFLVSYQFTKPIKRLIGHINQVQSGNFNVVVPVDRKDEIG 366 Query: 351 LLETKLDQMSHRIREHIRTEYIISLEKKSSELKALQAQINPHFLQNTLQMIGSMLFKNSP 410 +L + + M IR+ I +EY + + K+++L+A+QAQINPHFL N LQ IG++ Sbjct: 367 ILARRFNTMIQTIRDLINSEYRLEIANKTNQLRAMQAQINPHFLYNALQSIGTLALHAGA 426 Query: 411 AESYGVLRSLSDMFRYIIREPEDLAPLRAELNHLNNYMQIQQQRFAARLDYRLQVDEGAL 470 + Y ++ S++ M RY + E + P ELNH Y+++QQQRF +L +D +L Sbjct: 427 PKVYTLITSIAKMMRYNMNTSESIVPFSMELNHAKAYLELQQQRFNEQLTVHYDIDPASL 486 Query: 471 NSLIPKLTLQPITENAFFHGLER--QEGPWELEVKVSRTGEDTLIVIRDNGVGLEPDKLA 528 + +PK+ LQP+ EN F HG E + G L +V+ G I I DNG G++PDKL Sbjct: 487 SVQVPKMLLQPLVENYFKHGYETSGRSGVLRLFSEVTDDGSWLTIRIEDNGSGMDPDKLR 546 Query: 529 ELQRRLTSRSGKLWTYGERIGLSNVASRIHLHFGGSYGIQVESREGQGTTVTVTIPL 585 EL++ L +G L + IG+SNV R+ L++ + ++S G TVT+ IP+ Sbjct: 547 ELRQLLFRSTGALLEEQKSIGISNVWMRLKLYYNEEAEMSIDSSPSGGFTVTLRIPV 603 >C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein Length = 601 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 162/601 (26%), Positives = 265/601 (44%), Gaps = 44/601 (7%) Query: 17 IRNKLILTMILLATLPIVAITGLAAENSRRSMETEVINTNLSNMKWTGVYLGDQFTQLNN 76 ++NKL + IL+ + + + + S +S+ T+++++ M G + + ++ + Sbjct: 11 MKNKLFIGFILVIAVLVSLLGYFSMTFSEQSIRTQMLDSIQETMNQMGENIEGEIQKVLD 70 Query: 77 LIYTVMISPHLSDYLASAEEPNLSSQFTAQRNIIDTLTNLFYSAGNHVVGV-------EM 129 + V ++ L L E+P ++ ++ + + N Y+A V V + Sbjct: 71 VSAQVCLNEELCTVLQE-EKPGTIEEYYSKDKTMRQILNESYAAYFSVEDVFVCSYNGSV 129 Query: 130 YLKEYNKL-------FTVNASRNDI-QSPAVVPAPYKQLFDRDKDFMITTDSSDGTKFQL 181 Y + NKL FT D+ QS A V L D I+T F + Sbjct: 130 YGSDKNKLSLTADYDFTRTGWFADMKQSGAGVSI----LSQYDSSSYISTGEPQKL-FSI 184 Query: 182 IRSINRFENQEKLGGISLQIRWGVLDQTLDLLGRGNEHTVFIAGADGKVLYQPWGSAPAS 241 ++ I + + +++G + + + +L L + I + K++Y P + Sbjct: 185 VKKIYNYRSGKEIGCLIVHMNSDILGNVLQSVNSNEYQQCLIIDNNKKIIYHP--DSDYI 242 Query: 242 GTLSRIADTGE----SQGYFRSDHE--YVFYNTIDPVGLKLVTVIPDSFINQSAMATMNF 295 GT R A E GY S E Y+ ++T G +++V+ + +I S F Sbjct: 243 GTQYREARVSELLTMENGYMESLSEKGYLVFSTSAVTGWSVISVVDNKYIMDSINRLRLF 302 Query: 296 XXXXXXXXXXXXXXXXXXXXWRLATPIVNLAR--YVQGFGMMKEREVRLSNRVDEIGLLE 353 ++ P+ L R Y G G R + DEIG L Sbjct: 303 LILTAVFCVVLSVYFASYISKTISDPVARLQRKMYQVGEGDFDIRAA--TGASDEIGQLT 360 Query: 354 TKLDQMSHRIREHIRTEYIISLEKKSSELKALQAQINPHFLQNTLQMIGSMLFKNSPAES 413 D+M R ++ I Y + +K +EL ALQAQINPHFL NTLQ I M + E Sbjct: 361 LSFDKMVERTKQLIENVYQSEIYQKEAELNALQAQINPHFLYNTLQTIDMMAEEEGADEI 420 Query: 414 YGVLRSLSDMFRYIIREPEDLAPLRAELNHLNNYMQIQQQRFAARLDYRLQVDEGALNSL 473 ++LS +FRY I ++ ++ E+ H+ NYM IQ+ RF +L+ R + Sbjct: 421 SDACQALSKIFRYSINRGQEFVHVQDEIVHIENYMLIQKLRFGGKLEVRYDIQNECRELY 480 Query: 474 IPKLTLQPITENAFFHGLERQEGPWELEVKVSRTGEDTLIV-IRDNGVGLEPDKLAELQR 532 I KL +QP+ ENA HG+E + ++V R ED L + DNG G+ P +L EL Sbjct: 481 IVKLLIQPMVENAVVHGMENVLDKCYVTIRVYRK-EDCLYAEVEDNGTGIAPGQLMELNE 539 Query: 533 RLTSRSGKLWTYGE--------RIGLSNVASRIHLHFGGSYGIQVESREGQGTTVTVTIP 584 +L +RS + E IGL N +RI L+FG YGI + S EG GT V + +P Sbjct: 540 KL-ARSAEQKMVHEVDYVKNHRSIGLENTNARIKLYFGQEYGITITSEEGTGTKVCIKLP 598 Query: 585 L 585 + Sbjct: 599 V 599 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,157,339,762 Number of extensions: 127562582 Number of successful extensions: 413035 Number of sequences better than 1.0e-05: 2062 Number of HSP's gapped: 410247 Number of HSP's successfully gapped: 2062 Length of query: 585 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 444 Effective length of database: 1,732,333,088 Effective search space: 769155891072 Effective search space used: 769155891072 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)