BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0005.p (315 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4L1M5.1 C4L1M5_EXISA Response regulator receiver protein 183 1e-44 Q8ESY8.1 Q8ESY8_OCEIH ABC transporter ATP-binding protein 176 3e-42 Q9K638.1 Q9K638_BACHD ABC transporter (ATP-binding protein) 171 8e-41 C4WB88.1 C4WB88_STAWA ABC transporter ATP-binding protein 166 2e-39 B1IDP0.1 B1IDP0_CLOBK Transcriptional regulator, LytR family 166 2e-39 >C4L1M5.1 C4L1M5_EXISA Response regulator receiver protein Length = 326 Score = 183 bits (465), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 157/265 (59%), Gaps = 1/265 (0%) Query: 51 IPVFDHQDGLYMRLTVENNIAFFHKWFGCKEPLSEILVRFELQHDAKKPLHKCSESEIRR 110 + +F +DGLY RLT+E + F + + + + ++ + +L K+ LH+ + S +RR Sbjct: 63 LSLFSIRDGLYDRLTIEEYLRFTKRLYDSADSVDSVMQQLQLTTYRKQRLHRLNRSLVRR 122 Query: 111 VCFAKYYMSGVPSAVFCEPIHGADIKTIHTFVRMLQTMKEQPAAVLILVSNLEHALLVGD 170 +A + VF EP D +T H LQT+ + AVL+L SN+E AL + Sbjct: 123 TQYAALLLQDRDLYVFEEPDQDVDQETRHLLRDTLQTLTSRQKAVLVLTSNIESALFMTS 182 Query: 171 VVYKLQPSGIKPVETXXXXXXXXXXXXXXXXXXKLFKISAKVDEKMILFDPPEIDYIESQ 230 VY++ ++ ++ + KI KV+EK+IL DPPEID+IESQ Sbjct: 183 TVYRIDHRHLRLLDVEPEEADETDISSEVIHV-RFEKIPTKVNEKIILLDPPEIDFIESQ 241 Query: 231 DGKAMIVINNEKYAMDATMLETEKKLEAYGFYRCHRSYIVNLQKVREIITWSKNAYSLRI 290 DG++++ ++++ TM E E +L YGF+RCHRSY+VNLQ+VRE+IT++KN++SL + Sbjct: 242 DGQSILHSQSDQFPSVFTMNELETRLTPYGFFRCHRSYLVNLQRVREVITYTKNSFSLVL 301 Query: 291 DNKIQSTIPLSRTKIQDIQEKFNLE 315 D+ ++TIPLS+TK+ +++ L+ Sbjct: 302 DDPEKTTIPLSKTKMAELKTMMGLK 326 >Q8ESY8.1 Q8ESY8_OCEIH ABC transporter ATP-binding protein Length = 346 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 174/325 (53%), Gaps = 30/325 (9%) Query: 16 FSPFYLAVGDFQATAIYSDPDIQNELVK----DLRSNTD------IPVFDHQD------- 58 FS F+L + + + AI+S +++ L+K D + N I + D + Sbjct: 17 FSTFHLTIQEGEVAAIHSSLNVRQMLIKMIVGDKKINNGSIELNGITLKDKVEYFQALGL 76 Query: 59 -----GLYMRLTVENNIAFFHKWFGCKEPLSEILVRFELQHDAKKPLHKCSESEIRRVCF 113 GLY R+ ++ F K + +++ + +L KP+ K +ESE +RV + Sbjct: 77 QLLNNGLYERMNIKEYFRFMEKLYQTNVNHQDLIEKLQLHEVKDKPISKLTESEQKRVHY 136 Query: 114 AKYYMSGVPSAVFCEPIHGADIKTIHTFVRMLQTMKEQPAAVLILVSNLEHALLVGDVVY 173 K + +F EP D++T V +L +K+ VLIL SN+E A+ + + VY Sbjct: 137 GKAIIQDASIYLFEEPDLNVDLETKRVLVHVLNHLKQNKKGVLILTSNMESAITLAERVY 196 Query: 174 KLQPSGIKPVETXXXXXXXXXXXXXXXXXX--------KLFKISAKVDEKMILFDPPEID 225 +L G++ VE +L KI +KV++K++L DPPEID Sbjct: 197 RLNEEGLQTVEIKTEENEEKQEIDEVSEEELGKQDFSFQLNKIPSKVNDKIVLLDPPEID 256 Query: 226 YIESQDGKAMIVINNEKYAMDATMLETEKKLEAYGFYRCHRSYIVNLQKVREIITWSKNA 285 YIES +G+A++ + + T+ + E+KLE GF+RCHRSYIVNLQKVRE+ITW++N+ Sbjct: 257 YIESDEGQAVVHMKGSSFRTAFTLRQLEEKLEHQGFFRCHRSYIVNLQKVREVITWTRNS 316 Query: 286 YSLRIDNKIQSTIPLSRTKIQDIQE 310 YSL + +K ++ +PLS+ K+ ++++ Sbjct: 317 YSLVLQDKEKTQVPLSKAKLVELKQ 341 >Q9K638.1 Q9K638_BACHD ABC transporter (ATP-binding protein) Length = 345 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/254 (36%), Positives = 148/254 (58%), Gaps = 4/254 (1%) Query: 61 YMRLTVENNIAFFHKWFGCKEPLSEILVRFELQHDAKKPLHKCSESEIRRVCFAKYYMSG 120 Y RLT + FF + +G + ++E+L + L K + K S SE RR+ FAK + Sbjct: 87 YERLTPSAYLQFFQRLYGKEADVTELLRQVHLLDKQKVKIKKLSYSEKRRLAFAKAIVHD 146 Query: 121 VPSAVFCEPIHGADIKTIHTFVRMLQTMKEQPAAVLILVSNLEHALLVGDVVYKLQPSGI 180 + EP D+++ + ++++ E +VL++ SNLE A+ + D VY+L +G+ Sbjct: 147 PELVILEEPDQNIDLESKRILSKWIRSLVEANRSVLVITSNLESAISMTDYVYRLNENGL 206 Query: 181 KPVETXXXXXXXXXXXXX----XXXXXKLFKISAKVDEKMILFDPPEIDYIESQDGKAMI 236 K VE +L +I AKV+EKMILFDP EIDYIES +G A + Sbjct: 207 KLVEVIDGRNQTQNETSVDPTDVTRPFQLERIPAKVNEKMILFDPTEIDYIESHEGFANL 266 Query: 237 VINNEKYAMDATMLETEKKLEAYGFYRCHRSYIVNLQKVREIITWSKNAYSLRIDNKIQS 296 + + + T+ E + +L+ +GF+RCHRSY+VNLQKVRE++TWS+N+YSL +D Sbjct: 267 HVKGQVFLCTMTLNELDGRLKPFGFFRCHRSYLVNLQKVREVMTWSRNSYSLILDTAQHD 326 Query: 297 TIPLSRTKIQDIQE 310 +IPLS+ ++ ++++ Sbjct: 327 SIPLSKGRLAELKQ 340 >C4WB88.1 C4WB88_STAWA ABC transporter ATP-binding protein Length = 302 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 154/286 (53%), Gaps = 4/286 (1%) Query: 30 AIYSDPDIQNELVKDLRSNTDIPVFDHQDGLYMRLTVENNIAFFHKWFGCKEPLSEILVR 89 +I ++ +IQ E+V+ SN I F + R+ V+ I F+ KW+ + +IL Sbjct: 21 SIIAEEEIQKEIVEANHSNDLIYCFLLDNVFPERMKVKEIIKFWIKWYSIDTTIDDILYT 80 Query: 90 FELQHDAKKPLHKCSESEIRRVCFAKYYMSGVPSAVFCEPIHGADIKTIHTFVRMLQTMK 149 F L K + + SE + + + + + EPI D++T + +L K Sbjct: 81 FYLSKFDNKFVKNLTISESKLLKITGALLHPSKNILLKEPIQSTDLETKDIIITLLNNQK 140 Query: 150 EQPAAVLILVSNLEHALLVGDVVYKLQPSGIKPVETXXXXXXXXXXXXXXXXXXKLFKIS 209 ++ L ++ E ALL+ + +++ +KPVE +L + Sbjct: 141 -HTKNIICLTNHTEEALLMTNNSFRISKDVLKPVEISTESKEDSTKNLEVKQIPRL---T 196 Query: 210 AKVDEKMILFDPPEIDYIESQDGKAMIVINNEKYAMDATMLETEKKLEAYGFYRCHRSYI 269 K+++K + DP +IDYIES+DGK I +NNE Y DAT+ E + YGFYRCHRSYI Sbjct: 197 VKLNDKTMFLDPSDIDYIESRDGKVQIHVNNETYEHDATLQSMEALILPYGFYRCHRSYI 256 Query: 270 VNLQKVREIITWSKNAYSLRIDNKIQSTIPLSRTKIQDIQEKFNLE 315 +NLQKV+EII+WSKN+YS+R++ S IP+SR KI +I+E F ++ Sbjct: 257 INLQKVKEIISWSKNSYSIRLNYSKDSLIPISRNKINEIEEHFRIK 302 >B1IDP0.1 B1IDP0_CLOBK Transcriptional regulator, LytR family Length = 338 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/267 (31%), Positives = 152/267 (56%), Gaps = 1/267 (0%) Query: 49 TDIPVFDHQDGLYMRLTVENNIAFFHKWFGCKEPLSEILVRFELQHDAKKPLHKCSESEI 108 ++I V ++ Y R+T+E + FF K EI+++ L K + + S+ Sbjct: 72 SNIGVVLREESFYDRMTIEEYMKFFFSLLSSKVDYKEIMLKLALLDIGNKKIKDLNYSQK 131 Query: 109 RRVCFAKYYMSGVPSAVFCEPIHGADIKTIHTFVRMLQTMKEQPAAVLILVSNLEHALLV 168 RR+ FA+ + +F EPI D + ++ +K A+LI + L++ Sbjct: 132 RRLSFARERLKQPRFLIFQEPILNMDRDGAKVIIENIEDLKSNGTAILITSVVFKDTLML 191 Query: 169 GDVVYKLQPSGIKPVETXXXXXXXXXXXXXXXX-XXKLFKISAKVDEKMILFDPPEIDYI 227 + Y+L G+ ++ K+ KI AK+DE+++LFDP +IDYI Sbjct: 192 SEKAYRLNDEGLVELDNSLEESKNEREEVLDKKPVYKIEKIPAKLDERILLFDPIDIDYI 251 Query: 228 ESQDGKAMIVINNEKYAMDATMLETEKKLEAYGFYRCHRSYIVNLQKVREIITWSKNAYS 287 ESQ G + + I +K+ ++ + E++L+ +GF+RCHRSY+VNLQ+V+E+ITW++N+Y+ Sbjct: 252 ESQQGVSNLTIRGDKFPCTISLTDLEERLKYFGFFRCHRSYLVNLQRVKEVITWTRNSYT 311 Query: 288 LRIDNKIQSTIPLSRTKIQDIQEKFNL 314 L +D+K++S+IPLS+ +++++++ NL Sbjct: 312 LSLDDKVKSSIPLSKRRLEELKDILNL 338 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,692,528,457 Number of extensions: 63431353 Number of successful extensions: 181514 Number of sequences better than 1.0e-05: 450 Number of HSP's gapped: 181802 Number of HSP's successfully gapped: 451 Length of query: 315 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 180 Effective length of database: 1,788,859,178 Effective search space: 321994652040 Effective search space used: 321994652040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)