BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0004.p (282 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K639.1 Q9K639_BACHD ABC transporter (ATP-binding protein) 304 6e-81 C4WB89.1 C4WB89_STAWA Nod factor export ATP-binding protein I EC... 300 1e-79 B3K3T1.1 B3K3T1_9BACI ABC transporter related 300 1e-79 C2C335.1 C2C335_LISGR ABC superfamily ATP binding cassette trans... 292 3e-77 C3DT60.1 C3DT60_BACTS ABC transporter ATP-binding protein 290 1e-76 >Q9K639.1 Q9K639_BACHD ABC transporter (ATP-binding protein) Length = 282 Score = 304 bits (778), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 146/281 (51%), Positives = 199/281 (70%) Query: 1 LEHAIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGN 60 +EH IE +RK F K +K++SF +K+GE FGFLGPSG+GKTTTIK+LTG++ DG Sbjct: 1 MEHVIEVKHLRKTFDGKEALKDVSFSIKRGETFGFLGPSGAGKTTTIKILTGQVRSFDGE 60 Query: 61 LEVLGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREV 120 + + G + F S+IG+L+DNS LYERLTV DNL ++ KLY P RI +L EV Sbjct: 61 VALFGKPVHRLKRKTFMSQIGVLTDNSGLYERLTVQDNLSMYCKLYSVPERRIHDVLAEV 120 Query: 121 QLQDELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNE 180 L+DE AK VSKLS+GMKQRV+LA+A++HKP LLFLDEPTSALDP + IH L++LN Sbjct: 121 GLRDERAKIVSKLSKGMKQRVILARAMLHKPDLLFLDEPTSALDPASSHMIHDSLRRLNR 180 Query: 181 AGTTIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVI 240 GTTIFLTTH+M EA +CDRVAFL G+++ +D P LR Y+ + G+R ++ Sbjct: 181 EGTTIFLTTHDMLEAEKICDRVAFLDQGKIRVMDTPEQLRLTYADSTITLLLKGGRREIV 240 Query: 241 ENEPEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 EN + A+ +S ++ G++ ++H++ PTLG +FL+VTG EL Sbjct: 241 ENNLDGANTISQVMKNGELLSIHSNEPTLGDVFLRVTGKEL 281 >C4WB89.1 C4WB89_STAWA Nod factor export ATP-binding protein I EC=3.6.3.- Length = 287 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/281 (51%), Positives = 193/281 (68%) Query: 1 LEHAIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGN 60 +E+ IE + K F + VI ++ +VK+GEIFGFLGPSG+GKTTTI ML G P+ G+ Sbjct: 1 MENIIEMSDVTKKFNSEVVIDDMCIEVKKGEIFGFLGPSGAGKTTTISMLIGASRPSKGS 60 Query: 61 LEVLGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREV 120 L V G G++ F + IGIL+D S+ YERLT+YDNLKL +LY PL+++E L V Sbjct: 61 LTVNGFNNTNIGSSKFMATIGILTDISNTYERLTIYDNLKLVAQLYDVPLSKVEETLELV 120 Query: 121 QLQDELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNE 180 L+ K LS GMKQRVLLAK+LIH P +LFLDEPTS+LDP HIHRGLK LNE Sbjct: 121 NLKYAKNKVCKNLSAGMKQRVLLAKSLIHSPDILFLDEPTSSLDPTTRNHIHRGLKALNE 180 Query: 181 AGTTIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVI 240 GTT+FLTTH+MEEA LCDRVAF++HG+++ +D P LRY +S H+ + + Sbjct: 181 KGTTVFLTTHDMEEANKLCDRVAFINHGKVKLIDTPQNLRYSFSNHSLTVINHEDIMKTM 240 Query: 241 ENEPEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 + + AD + DL+ + ++K + TD PTLG++FLKVTG EL Sbjct: 241 KINKQTADYIHDLMLKDEIKYLSTDLPTLGEVFLKVTGEEL 281 >B3K3T1.1 B3K3T1_9BACI ABC transporter related Length = 282 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 144/282 (51%), Positives = 197/282 (69%) Query: 1 LEHAIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGN 60 ++ IE + KAFG+K+ ++++ F V QGEIFGFLGPSGSGKTTT+K+LT +L PT G Sbjct: 1 MQPIIEVDQLLKAFGNKSALQHIQFNVHQGEIFGFLGPSGSGKTTTVKILTSQLLPTSGT 60 Query: 61 LEVLGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREV 120 ++V G K + K IGIL+DNS+LYERLT+ DNL+LF +LY RI +L EV Sbjct: 61 VKVFGQPINKMNDSSHKRRIGILTDNSALYERLTIQDNLELFCRLYDVESKRIAEVLEEV 120 Query: 121 QLQDELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNE 180 L ++ V KLS+GMKQRV+LA+A++HKP LLFLDEPTSALDP N HIH GL+KLN Sbjct: 121 NLANDRQTMVKKLSKGMKQRVMLARAILHKPDLLFLDEPTSALDPVNTLHIHEGLRKLNR 180 Query: 181 AGTTIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVI 240 GTTIFLTTHNM EA +LCDRVAF+H G ++ +D P LR ++ + + + V+ Sbjct: 181 EGTTIFLTTHNMMEAESLCDRVAFIHDGVIKAIDTPQQLRLAHADQSMTVLVKGEGKRVL 240 Query: 241 ENEPEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNELE 282 + E A ++ + G++ ++H++ PTLG IF+K+TG EL+ Sbjct: 241 QQNEESAQRIGQWMLEGRLLSIHSNEPTLGDIFVKMTGRELQ 282 >C2C335.1 C2C335_LISGR ABC superfamily ATP binding cassette transporter, ABC protein Length = 282 Score = 292 bits (747), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 149/281 (53%), Positives = 193/281 (68%) Query: 1 LEHAIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGN 60 +E+ I+ + K +I ++F+VK+GEIFGFLGPSGSGKTTTIKMLTG+ P+ G Sbjct: 1 MENIIKVNQLTKHLSGTRIIDAMTFQVKKGEIFGFLGPSGSGKTTTIKMLTGKYYPSGGE 60 Query: 61 LEVLGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREV 120 +EVLG +K G++ F +++GILSD+S+LYERLTV DNL LF KLY P +IE L V Sbjct: 61 IEVLGFPQSKIGSSAFANKVGILSDHSALYERLTVQDNLMLFAKLYDMPQTKIEEALAFV 120 Query: 121 QLQDELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNE 180 L D K + LS GMKQRVLLAK ++H+P+LLFLDEPTS+LDP MAHIH GLK LNE Sbjct: 121 DLADSKKKVIKTLSAGMKQRVLLAKTIMHEPELLFLDEPTSSLDPMTMAHIHNGLKALNE 180 Query: 181 AGTTIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVI 240 GTTIFLTTHNMEEA LC RVAF+ G L+ + P LR+++S + G + Sbjct: 181 KGTTIFLTTHNMEEANHLCHRVAFIESGMLKVIGTPEELRFRHSNQTIKVIHKNGNVKRL 240 Query: 241 ENEPEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 + + A +SD+I +K + +D P+LG +FLKVTG EL Sbjct: 241 DMNMDAARYISDMIEVDDLKFISSDLPSLGDVFLKVTGKEL 281 >C3DT60.1 C3DT60_BACTS ABC transporter ATP-binding protein Length = 280 Score = 290 bits (741), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 144/278 (51%), Positives = 198/278 (71%), Gaps = 1/278 (0%) Query: 4 AIEAVGMRKAFGDKTVIKNLSFKVKQGEIFGFLGPSGSGKTTTIKMLTGELAPTDGNLEV 63 AIE + K+FG KT ++N++ +VKQGEIFGFLGPSGSGKTTT+K+LT +L + G + V Sbjct: 4 AIEMKDVMKSFGGKTALRNVNIEVKQGEIFGFLGPSGSGKTTTVKILTSQLLHSVGTVRV 63 Query: 64 LGMEPAKFGTADFKSEIGILSDNSSLYERLTVYDNLKLFGKLYGAPLNRIEVILREVQLQ 123 LG + + D+K +IGIL+DNS LYERL++YDNL LF LY RI+ +L +V L Sbjct: 64 LGKDITGLSSIDYK-QIGILTDNSGLYERLSIYDNLLLFCDLYDCKKERIDEVLAQVNLL 122 Query: 124 DELAKTVSKLSRGMKQRVLLAKALIHKPKLLFLDEPTSALDPGNMAHIHRGLKKLNEAGT 183 D+ V KLS+GMKQRV LA+A++HKP +LFLDEPTSALDP N+ +IH+ LK LNE GT Sbjct: 123 DDKKTQVKKLSKGMKQRVTLARAILHKPDILFLDEPTSALDPVNVQNIHKILKDLNEEGT 182 Query: 184 TIFLTTHNMEEATALCDRVAFLHHGELQDLDNPAALRYKYSTHAFHIETFAGQRLVIENE 243 TIFLTTHNM+EA LC+R+AFL GE+ LD P LR +Y+ + Q+ V++ + Sbjct: 183 TIFLTTHNMDEAETLCNRIAFLCGGEIVALDTPENLRLQYAKDQIEVVLKDKQKEVVQKD 242 Query: 244 PEKADQVSDLIARGQVKAMHTDNPTLGQIFLKVTGNEL 281 A ++S+ + +G++ ++H+ PTLG IF++VTG L Sbjct: 243 ELGAKRISEWMNKGELISIHSHEPTLGDIFIEVTGRGL 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,628,504,593 Number of extensions: 65998270 Number of successful extensions: 525598 Number of sequences better than 1.0e-05: 97543 Number of HSP's gapped: 385856 Number of HSP's successfully gapped: 106714 Length of query: 282 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 148 Effective length of database: 1,798,280,193 Effective search space: 266145468564 Effective search space used: 266145468564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)