BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0412.0003.p
         (231 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2VJP6.1 C2VJP6_BACCE ABC transporter, permease protein                73   2e-11
C2U5H0.1 C2U5H0_BACCE ABC transporter, permease protein                73   2e-11
C2V3A9.1 C2V3A9_BACCE ABC transporter, permease protein                73   2e-11
C2YZC0.1 C2YZC0_BACCE ABC transporter, permease protein                73   2e-11
Q630W5.1 Q630W5_BACCZ ABC transporter, permease                        72   4e-11

>C2VJP6.1 C2VJP6_BACCE ABC transporter, permease protein
          Length = 234

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 66/96 (68%), Gaps = 5/96 (5%)

Query: 2  NIRRISAIFEKDIKDLMKNPELLIMLTAPILLSFILNRSIHGKITIALLYMIIGGIFTLV 61
          ++RR+SAIF K+++D   N ++L+M + PI+ +FI +R   G++ + ++ ++      L 
Sbjct: 4  SMRRVSAIFRKEVQDFKTNSQVLLMASLPIIFAFIFSRFGEGRMGVGIITLMA----FLF 59

Query: 62 TAGTIMTM-MAEEKEKKTLRGLIQSPASLLDIIVGK 96
           AG + +M +AEEKEK TLR L+ SPAS +++++GK
Sbjct: 60 VAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGK 95


>C2U5H0.1 C2U5H0_BACCE ABC transporter, permease protein
          Length = 234

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 66/96 (68%), Gaps = 5/96 (5%)

Query: 2  NIRRISAIFEKDIKDLMKNPELLIMLTAPILLSFILNRSIHGKITIALLYMIIGGIFTLV 61
          ++RR+SAIF K+++D   N ++L+M + PI+ +FI +R   G++ + ++ ++      L 
Sbjct: 4  SMRRVSAIFRKEVQDFKTNSQVLLMASLPIIFAFIFSRFGEGRMGVGIITLMA----FLF 59

Query: 62 TAGTIMTM-MAEEKEKKTLRGLIQSPASLLDIIVGK 96
           AG + +M +AEEKEK TLR L+ SPAS +++++GK
Sbjct: 60 VAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGK 95


>C2V3A9.1 C2V3A9_BACCE ABC transporter, permease protein
          Length = 234

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 66/96 (68%), Gaps = 5/96 (5%)

Query: 2  NIRRISAIFEKDIKDLMKNPELLIMLTAPILLSFILNRSIHGKITIALLYMIIGGIFTLV 61
          ++RR+SAIF K+++D   N ++L+M + PI+ +FI +R   G++ + ++ ++      L 
Sbjct: 4  SMRRVSAIFRKEVQDFKTNSQVLLMASLPIIFAFIFSRFGEGRMGVGIITLMA----FLF 59

Query: 62 TAGTIMTM-MAEEKEKKTLRGLIQSPASLLDIIVGK 96
           AG + +M +AEEKEK TLR L+ SPAS +++++GK
Sbjct: 60 VAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGK 95


>C2YZC0.1 C2YZC0_BACCE ABC transporter, permease protein
          Length = 234

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 67/100 (67%), Gaps = 13/100 (13%)

Query: 2  NIRRISAIFEKDIKDLMKNPELLIMLTAPILLSFILNRSIHGKITIALLYMIIGGIFTLV 61
          ++RR+SAIF K+++D   N ++L+M + PI+ +FI +R   G++ +        GI TL+
Sbjct: 4  SMRRVSAIFRKEVQDFKTNSQVLLMASLPIIFAFIFSRFGEGRMGV--------GIITLM 55

Query: 62 T----AGTIMTM-MAEEKEKKTLRGLIQSPASLLDIIVGK 96
          +    AG + +M +AEEKEK TLR L+ SPAS +++++GK
Sbjct: 56 SFLFVAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGK 95


>Q630W5.1 Q630W5_BACCZ ABC transporter, permease
          Length = 234

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 65/96 (67%), Gaps = 5/96 (5%)

Query: 2  NIRRISAIFEKDIKDLMKNPELLIMLTAPILLSFILNRSIHGKITIALLYMIIGGIFTLV 61
          ++RR+SAIF K+++D   N ++L+M + PI+ +FI +R   G+  + ++ ++      L 
Sbjct: 4  SMRRVSAIFRKEVQDFKTNSQVLLMASLPIIFAFIFSRFGEGQAGVGIITLMA----FLF 59

Query: 62 TAGTIMTM-MAEEKEKKTLRGLIQSPASLLDIIVGK 96
           AG + +M +AEEKEK TLR L+ SPAS +++++GK
Sbjct: 60 VAGFVQSMVIAEEKEKHTLRVLMLSPASSVEVLLGK 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 980,571,919
Number of extensions: 30526387
Number of successful extensions: 119314
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 119232
Number of HSP's successfully gapped: 88
Length of query: 231
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 100
Effective length of database: 1,826,543,238
Effective search space: 182654323800
Effective search space used: 182654323800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)