BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0412.0002.p (230 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3M1F6.1 Q3M1F6_ANAVT Abortive infection protein 109 2e-22 B1MCM7.1 B1MCM7_MYCA9 Putative abortive infection protein 105 4e-21 Q1PZV3.1 Q1PZV3_9BACT Putative uncharacterized protein 69 4e-10 Q7NGJ4.1 Q7NGJ4_GLOVI Gll3175 protein 63 2e-08 C3RCW0.1 C3RCW0_9BACE CAAX amino terminal protease family 63 3e-08 >Q3M1F6.1 Q3M1F6_ANAVT Abortive infection protein Length = 246 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 100/205 (48%), Gaps = 2/205 (0%) Query: 17 PGWPEILTALFLYLIGIVILGLWMSQITDEQASXXXXXXXXXXXXXXXXXXXXXXXXXVR 76 PGWPEI+ L +YLI + G+ + + +R Sbjct: 29 PGWPEIIVGLVVYLI-VGFGGISLFKQLSLDPVVYGLILTAWTGVATLIAFAVAARLRIR 87 Query: 77 NLRAFGFRVPERKWXXXXXXXXXXXXXXCFIIEGVYFHFITEPNNQAD-FQTAAQGGALS 135 +L AFG R +W + + + NN D + A+GG LS Sbjct: 88 SLSAFGVRRTSGRWLLIGVGVGLVAFVLKSLAILAWVQITGDTNNVQDVYGDGARGGLLS 147 Query: 136 LFILIISGAILTPLGEEFVFRGVIANALNRYGAWAGVVGSAAIFGLVHGFNVILFDAFMV 195 L + + A+ +PLGEE ++RG++ NAL RYG + GVVGS IF L+HG N I A + Sbjct: 148 LVLSTVFIAVFSPLGEELLYRGIVTNALLRYGPFVGVVGSTVIFALMHGINNIFPAAVVA 207 Query: 196 GILTGILFRKTGSIWPGVMVHIVYN 220 G+ T +FR++GSIWPG++VH V+N Sbjct: 208 GLATAEVFRRSGSIWPGLVVHFVFN 232 >B1MCM7.1 B1MCM7_MYCA9 Putative abortive infection protein Length = 223 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 9/218 (4%) Query: 15 ARPGWPEI----LTALFLYLIGIVILGLWMSQITDEQASXXXXXXXXXXXXXXXXXXXXX 70 ARPGW E+ TA+FLYL+G G+ ++++ Sbjct: 6 ARPGWLELGVAAATAVFLYLVG----GVAAYFVSEDFPIALGHVNFLISGLAPLGAFAVA 61 Query: 71 XXXXVRNLRAFGFRVPERKWXXXXXXXXXXXXXXCFIIEGVYFH-FITEPNNQADFQTAA 129 +R++R FG R W + + ++ F Q ++ AA Sbjct: 62 VLVRIRDVRPFGLRHTSLLWLLTGVVIGLVCFGLSWPVSAIFDPLFPGSEGVQQPYRDAA 121 Query: 130 QGGALSLFILIISGAILTPLGEEFVFRGVIANALNRYGAWAGVVGSAAIFGLVHGFNVIL 189 + GA+ + + G ILTPLGEE +FRGV+A L R+G+ VV SAA+F + HG N ++ Sbjct: 122 RSGAVPPIVAVGLGGILTPLGEEALFRGVLATFLFRWGSCVSVVFSAAVFAVAHGINGVM 181 Query: 190 FDAFMVGILTGILFRKTGSIWPGVMVHIVYNGLNLLYY 227 A M+G+ G+L +GSIWP VMVHI YN ++Y+ Sbjct: 182 PLALMIGLTNGVLLWCSGSIWPAVMVHIAYNSAGIVYH 219 >Q1PZV3.1 Q1PZV3_9BACT Putative uncharacterized protein Length = 259 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 2/121 (1%) Query: 106 FIIEGVYFHFITEPNNQADFQ-TAAQGGALSLFILIISGAILTPLGEEFVFRGVIANALN 164 FII V+ ++ P Q Q A+ A+ L LI G I+ P+ EE +FRG + AL Sbjct: 122 FIINAVFSYYGIMPEIQDVVQWVLAEDSAIVLACLIFFGIIVAPIMEEIIFRGFLVPALK 181 Query: 165 RY-GAWAGVVGSAAIFGLVHGFNVILFDAFMVGILTGILFRKTGSIWPGVMVHIVYNGLN 223 Y G + SAA+F VH F++G+L G L+ KT S+ ++VHI++N L Sbjct: 182 SYFGIRYAIFISAAVFAAVHMDMFAFLQIFILGVLLGYLYEKTQSLAASIVVHILHNSLT 241 Query: 224 L 224 L Sbjct: 242 L 242 >Q7NGJ4.1 Q7NGJ4_GLOVI Gll3175 protein Length = 462 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 138 ILIISGAILTPLGEEFVFRGVIANAL-NRYGAWAGVVGSAAIFGLVHGFNVILFDAFMVG 196 +L +S A+ PL EE +FRG + +L +R GA AGVV SAA+FG+ H + F F +G Sbjct: 367 VLFLSVAVAAPLFEETLFRGFVFPSLASRLGAPAGVVASAALFGIAHFSALEFFPLFALG 426 Query: 197 ILTGILFRKTGSIWPGVMVHIVYNGLNLLYYSTL 230 ++ ++ T S+ P +++H ++NG L+ + L Sbjct: 427 VVLATVYHYTRSLAPCILLHSLWNGSTFLFLTVL 460 >C3RCW0.1 C3RCW0_9BACE CAAX amino terminal protease family Length = 275 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 4/84 (4%) Query: 140 IISGAILTPLGEEFVFRGVIANALNRYG---AWAGVVGSAAIFGLVHGFNVILFDAFMVG 196 ++S AI+ P+ EEF+FRG I L R G WA +V SA IFG++HG + AF++G Sbjct: 125 VLSIAIVVPILEEFLFRGAIEGHLLRKGWSPKWAILV-SALIFGIIHGNPAQIPFAFLIG 183 Query: 197 ILTGILFRKTGSIWPGVMVHIVYN 220 +L G L+ +TGS+ PG++ HI+ N Sbjct: 184 LLFGWLYYRTGSLVPGIVGHIINN 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.144 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,131,236,387 Number of extensions: 39746985 Number of successful extensions: 160405 Number of sequences better than 1.0e-05: 421 Number of HSP's gapped: 160736 Number of HSP's successfully gapped: 421 Length of query: 230 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 99 Effective length of database: 1,826,543,238 Effective search space: 180827780562 Effective search space used: 180827780562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)