BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0407.0021.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZJC3.1 C0ZJC3_BREBN Putative uncharacterized protein                181   2e-44
C1XAJ5.1 C1XAJ5_9FUSO Putative translation initiation inhibitor,...   159   5e-38
A1ZKT4.1 A1ZKT4_9SPHI Endoribonuclease L-PSP                          139   6e-32
Q9RYB7.1 Q9RYB7_DEIRA Putative uncharacterized protein                132   1e-29
A6WBF2.1 A6WBF2_KINRD Endoribonuclease L-PSP                          132   1e-29

>C0ZJC3.1 C0ZJC3_BREBN Putative uncharacterized protein
          Length = 126

 Score =  181 bits (458), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/109 (82%), Positives = 97/109 (88%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           VGYCRAIR+GDRIEVAGTTA+KDG+V G    Y QTRFIL+TIEKAL EL A L +VVRT
Sbjct: 16  VGYCRAIRVGDRIEVAGTTAMKDGEVVGLDDAYVQTRFILETIEKALRELDADLSHVVRT 75

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           RMFVTDISKWEE GKAHGEFF+EIQPVATMVEVKALIDP LL+EIEVEA
Sbjct: 76  RMFVTDISKWEEIGKAHGEFFREIQPVATMVEVKALIDPRLLVEIEVEA 124


>C1XAJ5.1 C1XAJ5_9FUSO Putative translation initiation inhibitor, yjgF family
          Length = 126

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 74/111 (66%), Positives = 93/111 (83%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           VGY RA+RIG+  E+AGTTA++DGK +  G+ YEQT++IL+ I+K L + G GL NV+RT
Sbjct: 15  VGYSRAVRIGNIFEIAGTTAVRDGKPYAVGNAYEQTKYILENIKKLLEKEGLGLKNVIRT 74

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEAAA 111
           RMFVTDISKWEE+GKAHGEFF+ I+PVATMVEV +LID +L+IEIEV A A
Sbjct: 75  RMFVTDISKWEEYGKAHGEFFRNIKPVATMVEVSSLIDKELMIEIEVSAVA 125


>A1ZKT4.1 A1ZKT4_9SPHI Endoribonuclease L-PSP
          Length = 128

 Score =  139 bits (351), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/110 (60%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKD-GKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVR 59
           VGY RA++IG+ IEV+GTTA++D  ++ G    Y QTRF+L+ IE AL + GA L +VVR
Sbjct: 16  VGYSRAVKIGNLIEVSGTTAVEDENRIVGIDDAYRQTRFVLEKIEDALNQAGATLKDVVR 75

Query: 60  TRMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           TRM+VTDIS+WE  GKAH EFF  I P  +MVEV ALI+PDLL+EIE  A
Sbjct: 76  TRMYVTDISQWEAIGKAHNEFFGAINPATSMVEVSALINPDLLVEIEATA 125


>Q9RYB7.1 Q9RYB7_DEIRA Putative uncharacterized protein
          Length = 157

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/109 (58%), Positives = 82/109 (75%)

Query: 1   VGYCRAIRIGDRIEVAGTTAIKDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVRT 60
           VGY RA+R+G+ ++VAGTTA  DG+V G G  Y QT+  L  I +AL + GA L++VVRT
Sbjct: 43  VGYSRAVRVGNIVQVAGTTATVDGEVVGVGDAYWQTKVALGLIRQALEQAGARLEDVVRT 102

Query: 61  RMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           RM+V DIS+WE+ G+AHGE F  I+P ATMV+V ALIDP  L+EIE EA
Sbjct: 103 RMYVPDISRWEQVGRAHGEVFGAIRPAATMVQVAALIDPRHLVEIEAEA 151


>A6WBF2.1 A6WBF2_KINRD Endoribonuclease L-PSP
          Length = 133

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%), Gaps = 1/110 (0%)

Query: 1   VGYCRAIRIGDRIEVAGTTAI-KDGKVFGKGSPYEQTRFILQTIEKALGELGAGLDNVVR 59
           VGY RA+R+G  I VAGTTA   DG   G     EQTR  ++ IE AL ++GAGL +VVR
Sbjct: 21  VGYSRAVRVGSWISVAGTTAAGPDGAPVGGDDIAEQTREAIRRIEAALAQVGAGLGDVVR 80

Query: 60  TRMFVTDISKWEEFGKAHGEFFKEIQPVATMVEVKALIDPDLLIEIEVEA 109
           TRMFVTDI++WEE G+AHGEFF +I+P ++MV++ ALIDP LL+E+E +A
Sbjct: 81  TRMFVTDITRWEEVGRAHGEFFADIRPASSMVQISALIDPRLLVEVEADA 130


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 646,339,723
Number of extensions: 23700553
Number of successful extensions: 59069
Number of sequences better than 1.0e-05: 433
Number of HSP's gapped: 59468
Number of HSP's successfully gapped: 433
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)