BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0018.p (550 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAD9.1 B3KAD9_9BACI Hybrid cluster protein 817 0.0 Q24S27.1 HCP_DESHY Hydroxylamine reductase EC=1.7.-.- 816 0.0 B8FWP2.1 HCP_DESHD Hydroxylamine reductase EC=1.7.-.- 815 0.0 Q97FI7.1 HCP1_CLOAB Hydroxylamine reductase 1 EC=1.7.-.- 793 0.0 Q8R6M9.1 HCP_THETN Hydroxylamine reductase EC=1.7.-.- 786 0.0 >B3KAD9.1 B3KAD9_9BACI Hybrid cluster protein Length = 561 Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/545 (73%), Positives = 444/545 (81%), Gaps = 1/545 (0%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFCFQCQEA+KG+GCTI GVCGK +VANLQDLL+Y LKGIS + R + + Sbjct: 15 MFCFQCQEASKGTGCTIVGVCGKPHDVANLQDLLIYLLKGISFLSLDVRLPEVLEQRVSL 74 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAGTD 123 F+ S+FATITNANF E F RIRE + LR + R DAA+W A + Sbjct: 75 FVMDSLFATITNANFDREVFVGRIREAIELRGEVRTYYNEQFPEGTANLPDAAVWQADNE 134 Query: 124 EDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKGLA 183 KA+ VGVL+T +EDIRSLREL+TYGLKGMAAY HA L + + FM + LA Sbjct: 135 ASFDEKARTVGVLSTRNEDIRSLRELITYGLKGMAAYTYHALHLEKDDHELNRFMRRALA 194 Query: 184 SVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILISG 243 + LDD+L +L AL +E GK GV MA+LD ANTS YGNPEITKVNIGV RPGILISG Sbjct: 195 ATLDDSLEVQDLVALTMETGKYGVNAMAMLDEANTSVYGNPEITKVNIGVSNRPGILISG 254 Query: 244 HDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFASFN 303 HDLKD+E LLKQTEGTGVDVYTHSEMLPAHYYPAFKKY HFVGNYGNAWWKQN EFA+FN Sbjct: 255 HDLKDLEELLKQTEGTGVDVYTHSEMLPAHYYPAFKKYEHFVGNYGNAWWKQNSEFAAFN 314 Query: 304 GPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENG-EKDFTAIIEQAKNCEPPT 362 GPILMTTNCIVPPKDSY +R+YTTG+TGFPGV+HI G +G KDF+ +IEQAK C PT Sbjct: 315 GPILMTTNCIVPPKDSYKDRIYTTGNTGFPGVRHIPEGTDGAPKDFSLLIEQAKGCPAPT 374 Query: 363 ELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELPG 422 ELETGEI+GGFAHAAVMNVADQVV+AV+SGAI++FFVMAGCDGRMKSRNYYTDFAAELP Sbjct: 375 ELETGEIIGGFAHAAVMNVADQVVDAVKSGAIRRFFVMAGCDGRMKSRNYYTDFAAELPK 434 Query: 423 DTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDLP 482 DTVILTAGCAKYKYNKL LGEIGGIPRVLDAGQCNDSYSLVVIA+KLKEVFGL DINDLP Sbjct: 435 DTVILTAGCAKYKYNKLDLGEIGGIPRVLDAGQCNDSYSLVVIALKLKEVFGLEDINDLP 494 Query: 483 IAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKED 542 I+YNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVD FGI GIT V++D Sbjct: 495 ISYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDNFGIGGITNVEDD 554 Query: 543 MEHFI 547 ++ F+ Sbjct: 555 IKMFL 559 >Q24S27.1 HCP_DESHY Hydroxylamine reductase EC=1.7.-.- Length = 549 Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/545 (71%), Positives = 451/545 (82%), Gaps = 1/545 (0%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFCFQCQE AKG+GCTI+GVCGKT++VANLQDLLLY +KGI+I + + RELGI +K Sbjct: 3 MFCFQCQETAKGTGCTIKGVCGKTADVANLQDLLLYVMKGIAINSLQARELGIVRQDVDK 62 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAGTD 123 F+ +FATITNANF F A +REGLALRD + HD+A+WTA + Sbjct: 63 FVMEGLFATITNANFDNARFVALVREGLALRDSLKADIVKAGGVLPANLHDSAIWTADSA 122 Query: 124 EDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKGLA 183 E+ KA +VG+LATE+ED+RSLRELL YGLKGMAAY EHA LGY + AFM KGLA Sbjct: 123 EEFEQKAAQVGILATENEDVRSLRELLIYGLKGMAAYAEHAFALGYEDNSIFAFMMKGLA 182 Query: 184 SVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILISG 243 + DD+LS D+L ALVLE GK GV VMALLD+ANT++YGNPEITKVNIGV P ILISG Sbjct: 183 ATTDDSLSADQLVALVLEAGKYGVDVMALLDKANTTSYGNPEITKVNIGVRNNPAILISG 242 Query: 244 HDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFASFN 303 HDL+D+E LLKQTEGTGVDVYTH EMLPAHYYPAFKKY+HFVGNYGNAWWKQ++EF SFN Sbjct: 243 HDLRDLEDLLKQTEGTGVDVYTHGEMLPAHYYPAFKKYAHFVGNYGNAWWKQDKEFDSFN 302 Query: 304 GPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGE-KDFTAIIEQAKNCEPPT 362 G IL+TTNC+VPPKDSY +RL+TT G+ GV+HI A E G+ KDF+A+IE AK PT Sbjct: 303 GAILLTTNCLVPPKDSYKDRLFTTSVVGYEGVKHIPAREAGKVKDFSAVIELAKTLPAPT 362 Query: 363 ELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELPG 422 E+ETGEIVGGFAH V VAD+VVEAV+SGA+K+FFVMAGCDGRMKSR+YYT+FA LP Sbjct: 363 EIETGEIVGGFAHNQVFAVADKVVEAVKSGAVKRFFVMAGCDGRMKSRDYYTEFAKALPQ 422 Query: 423 DTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDLP 482 DT+ILTAGCAKYKYNKLALG+IGGIPRVLDAGQCNDSYSL VIA+KLKEVFGL D+N LP Sbjct: 423 DTIILTAGCAKYKYNKLALGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVFGLDDVNQLP 482 Query: 483 IAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKED 542 I+YNIAWYEQKAVIVLLALLYLGVKNIHLGPTLP FLSPNVAKVLV+ FGI+GITTV++D Sbjct: 483 ISYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPGFLSPNVAKVLVENFGIAGITTVEDD 542 Query: 543 MEHFI 547 + F+ Sbjct: 543 VNLFM 547 >B8FWP2.1 HCP_DESHD Hydroxylamine reductase EC=1.7.-.- Length = 549 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/545 (71%), Positives = 450/545 (82%), Gaps = 1/545 (0%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFCFQCQE AKG+GCTI+GVCGKT++VANLQDLLLY +KGI+I + + RELGI +K Sbjct: 3 MFCFQCQETAKGTGCTIKGVCGKTADVANLQDLLLYVMKGIAINSLQARELGIVRQDVDK 62 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAGTD 123 F+ +FATITNANF F A +REGLALRD + HD+A WTA + Sbjct: 63 FVMEGLFATITNANFDNARFVALVREGLALRDSLKADIVKAGGVLPANLHDSATWTADSA 122 Query: 124 EDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKGLA 183 E+ KA +VG+LATE+ED+RSLRELL YGLKGMAAY EHA LGY + AFM KGLA Sbjct: 123 EEFEQKAAQVGILATENEDVRSLRELLIYGLKGMAAYAEHAFALGYEDNSIFAFMMKGLA 182 Query: 184 SVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILISG 243 + DD+LS D+L ALVLE GK GV VMALLD+ANT++YGNPEITKVNIGV P ILISG Sbjct: 183 ATTDDSLSADQLVALVLEAGKYGVDVMALLDKANTTSYGNPEITKVNIGVRNNPAILISG 242 Query: 244 HDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFASFN 303 HDL+D+E LLKQTEGTGVDVYTH EMLPAHYYPAFKKY+HFVGNYGNAWWKQ++EF SFN Sbjct: 243 HDLRDLEDLLKQTEGTGVDVYTHGEMLPAHYYPAFKKYAHFVGNYGNAWWKQDKEFDSFN 302 Query: 304 GPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGE-KDFTAIIEQAKNCEPPT 362 G IL+TTNC+VPPKDSY +RL+TT G+ GV+HI A E G+ KDF+A+IE AK PT Sbjct: 303 GAILLTTNCLVPPKDSYKDRLFTTSVVGYEGVKHIPAREAGKVKDFSAVIELAKTLPAPT 362 Query: 363 ELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELPG 422 E+ETGEIVGGFAH V VAD+VVEAV+SGA+K+FFVMAGCDGRMKSR+YYT+FA LP Sbjct: 363 EIETGEIVGGFAHNQVFAVADKVVEAVKSGAVKRFFVMAGCDGRMKSRDYYTEFAKALPQ 422 Query: 423 DTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDLP 482 DT+ILTAGCAKYKYNKLALG+IGGIPRVLDAGQCNDSYSL VIA+KLKEVFGL D+N LP Sbjct: 423 DTIILTAGCAKYKYNKLALGDIGGIPRVLDAGQCNDSYSLAVIALKLKEVFGLDDVNQLP 482 Query: 483 IAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKED 542 I+YNIAWYEQKAVIVLLALLYLGVKNIHLGPTLP FLSPNVAKVLV+ FGI+GITTV++D Sbjct: 483 ISYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPGFLSPNVAKVLVENFGIAGITTVEDD 542 Query: 543 MEHFI 547 + F+ Sbjct: 543 VNLFM 547 >Q97FI7.1 HCP1_CLOAB Hydroxylamine reductase 1 EC=1.7.-.- Length = 530 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/544 (70%), Positives = 443/544 (81%), Gaps = 20/544 (3%) Query: 4 MFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATEK 63 MFC+QCQEAA GCT++GVCGKT ++A QDLL+YTLK +S++ R+L + + + Sbjct: 3 MFCYQCQEAAGCKGCTVRGVCGKTEDLAKKQDLLIYTLKVVSLYNVEARKLNLVNKEIDN 62 Query: 64 FITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXHDAALWTAGTD 123 +I S+FATITNANF FT RI +G+ +++ + + + AG + Sbjct: 63 YIVDSLFATITNANFDENIFTERIEKGIKYKEELKKQ----------------ISAAGGN 106 Query: 124 EDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKGLA 183 +L K + VGVL+TE+EDIRSLRELLTYG+KGMAAY++HA L Y + + Q FM K LA Sbjct: 107 VNLNEKTEAVGVLSTENEDIRSLRELLTYGIKGMAAYLKHARNLSYEDSNIQGFMSKALA 166 Query: 184 SVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILISG 243 + LDDTL DEL AL LECGK GV MALLD+ANT TYGNPEITKVNIG PGILISG Sbjct: 167 ATLDDTLGADELVALALECGKYGVDAMALLDKANTETYGNPEITKVNIGTRNNPGILISG 226 Query: 244 HDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFASFN 303 HDLKD+E LLKQTEGTGVDVYTHSEMLPA+YYPAFKKYSHFVGNYGNAWWKQNEEF SFN Sbjct: 227 HDLKDIEELLKQTEGTGVDVYTHSEMLPANYYPAFKKYSHFVGNYGNAWWKQNEEFESFN 286 Query: 304 GPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGE-KDFTAIIEQAKNCEPPT 362 GPILMTTNCIVPPK SYI+R+YTTG TG+PGV+HI ENGE KDF+AIIE AK C PPT Sbjct: 287 GPILMTTNCIVPPKASYIDRMYTTGVTGYPGVKHI---ENGEPKDFSAIIEHAKKCAPPT 343 Query: 363 ELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELPG 422 E+E GEI+GGFAH V+ +AD+VVEAV+SGAIK+F+VMAGCDGR K+RNYYTDFA LP Sbjct: 344 EIEKGEIIGGFAHNQVIALADKVVEAVKSGAIKRFYVMAGCDGRAKTRNYYTDFAKALPK 403 Query: 423 DTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDLP 482 D VILTAGCAKYKYNKL LG+IGGIPRVLDAGQCNDSYSLVVIA+KLKEVFGL DIN+LP Sbjct: 404 DAVILTAGCAKYKYNKLDLGDIGGIPRVLDAGQCNDSYSLVVIALKLKEVFGLNDINELP 463 Query: 483 IAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKED 542 IAYNIAWYEQKAVIVLLALL+LGVKNIHLGPTLPAFLSPNVAKVLVD FGI GIT V++D Sbjct: 464 IAYNIAWYEQKAVIVLLALLHLGVKNIHLGPTLPAFLSPNVAKVLVDNFGIGGITNVEDD 523 Query: 543 MEHF 546 ++ F Sbjct: 524 IKMF 527 >Q8R6M9.1 HCP_THETN Hydroxylamine reductase EC=1.7.-.- Length = 549 Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/546 (67%), Positives = 442/546 (80%), Gaps = 1/546 (0%) Query: 3 EMFCFQCQEAAKGSGCTIQGVCGKTSEVANLQDLLLYTLKGISIFAQRGRELGITDPATE 62 +MFC+QCQEA K +GCT GVCGKT++VANLQDLL++TLKGIS + RE+G+ T+ Sbjct: 2 KMFCYQCQEALKNTGCTTIGVCGKTADVANLQDLLIFTLKGISFLNLKAREVGVNKEKTD 61 Query: 63 KFITGSMFATITNANFTPEHFTARIREGLALRDQWRNRXXXXXXXXXXXXH-DAALWTAG 121 +F+ +F+TITN NF F +I+E +ALRD+ + + DA WT G Sbjct: 62 RFLIEGLFSTITNVNFDRNFFLRKIKEAVALRDEIKEDLRNKGVRVDEYKNIDAISWTYG 121 Query: 122 TDEDLLLKAQEVGVLATEHEDIRSLRELLTYGLKGMAAYMEHAAVLGYVEPDAQAFMEKG 181 TD D+ +QEVGVL+TE EDIRSLREL+TYG+KGMAAY HA LGY + + FMEK Sbjct: 122 TDADIEAISQEVGVLSTEDEDIRSLRELITYGVKGMAAYAYHAYQLGYKDDNIFKFMEKA 181 Query: 182 LASVLDDTLSGDELTALVLECGKMGVAVMALLDRANTSTYGNPEITKVNIGVGTRPGILI 241 LA VLDD+L+ D+ AL +E GK GV MALLD+ANTSTYG+PEITKVNIGV PGIL+ Sbjct: 182 LAKVLDDSLTVDDYVALAMETGKYGVDTMALLDKANTSTYGHPEITKVNIGVRNNPGILV 241 Query: 242 SGHDLKDMESLLKQTEGTGVDVYTHSEMLPAHYYPAFKKYSHFVGNYGNAWWKQNEEFAS 301 SGHDLKD+E LL+QT GTGVDVYTH EMLPAHYYPAFKKY HFVGNYGNAWW+Q++EF Sbjct: 242 SGHDLKDLEQLLEQTAGTGVDVYTHGEMLPAHYYPAFKKYPHFVGNYGNAWWQQDKEFEL 301 Query: 302 FNGPILMTTNCIVPPKDSYINRLYTTGHTGFPGVQHIAAGENGEKDFTAIIEQAKNCEPP 361 FNGPILMTTNC++PPKDSY +R+YTTG GF GV++I G +G+KDF+ IIE AK C+PP Sbjct: 302 FNGPILMTTNCLIPPKDSYKDRVYTTGVVGFEGVKYIPEGPDGKKDFSEIIEHAKRCKPP 361 Query: 362 TELETGEIVGGFAHAAVMNVADQVVEAVQSGAIKQFFVMAGCDGRMKSRNYYTDFAAELP 421 E+E GEI+GGFAH V+ +AD++VEAV++GAIK+FFVMAGCDGRMKSR YYT+FA LP Sbjct: 362 VEIERGEIIGGFAHNQVLQLADKIVEAVKTGAIKRFFVMAGCDGRMKSRTYYTEFAKALP 421 Query: 422 GDTVILTAGCAKYKYNKLALGEIGGIPRVLDAGQCNDSYSLVVIAMKLKEVFGLADINDL 481 DTVILTAGCAKY+YNKL LG+I GIPRVLDAGQCNDSYSL VIAMKLKE+FGL DIN+L Sbjct: 422 KDTVILTAGCAKYRYNKLNLGDIDGIPRVLDAGQCNDSYSLAVIAMKLKEIFGLNDINEL 481 Query: 482 PIAYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVAKVLVDTFGISGITTVKE 541 PI+YNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNV KVLV+ FGI GIT V++ Sbjct: 482 PISYNIAWYEQKAVIVLLALLYLGVKNIHLGPTLPAFLSPNVTKVLVEKFGIGGITNVED 541 Query: 542 DMEHFI 547 D++ F+ Sbjct: 542 DLKMFL 547 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,213,319,642 Number of extensions: 134898739 Number of successful extensions: 298581 Number of sequences better than 1.0e-05: 615 Number of HSP's gapped: 295958 Number of HSP's successfully gapped: 782 Length of query: 550 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 409 Effective length of database: 1,732,333,088 Effective search space: 708524232992 Effective search space used: 708524232992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)