BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0407.0017.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0CQV7.1 C0CQV7_9FIRM Putative uncharacterized protein 256 1e-66 A6TX79.1 A6TX79_ALKMQ Two component transcriptional regulator, w... 248 3e-64 A6TK02.1 A6TK02_ALKMQ Two component transcriptional regulator, w... 234 3e-60 B1DGE1.1 B1DGE1_9BACL Two component transcriptional regulator, w... 232 2e-59 B0MDX5.1 B0MDX5_9FIRM Putative uncharacterized protein 231 3e-59 >C0CQV7.1 C0CQV7_9FIRM Putative uncharacterized protein Length = 238 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 124/215 (57%), Positives = 167/215 (77%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 MA ILVV+DEK I+DLI+MNL++VGHR +AF ++ + ++ ++DL+LLD+MLP +DG Sbjct: 20 MAVILVVDDEKKINDLISMNLEMVGHRAIQAFTSKEALEWNQRAELDLVLLDIMLPELDG 79 Query: 61 FEWMRRRRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRSVK 120 +E + VPVI++TAKDSL D++ G +LGADDY+ KPFE +ELLAR+ VLRR + Sbjct: 80 YELLPYFMKKQVPVIYLTAKDSLMDKVKGLKLGADDYVTKPFESIELLARVETVLRRCGR 139 Query: 121 EEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLELAWGYE 180 +E+ F G+V V RK+++ VELTA+EF LLEVLI+N N+ALSRE+LLE AWGY Sbjct: 140 QEKEFCLGEVTVNFAQRKVFRGQNPVELTAQEFALLEVLIRNCNLALSREQLLEQAWGYV 199 Query: 181 FEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRL 215 +EG+TRTVD+HI++LRKKLGWE+ I TVYK GYRL Sbjct: 200 YEGETRTVDIHIQRLRKKLGWEKEIETVYKYGYRL 234 >A6TX79.1 A6TX79_ALKMQ Two component transcriptional regulator, winged helix family Length = 218 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 123/219 (56%), Positives = 164/219 (74%), Gaps = 1/219 (0%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 MA IL+VEDE+ I+DLI MNL+LVGH + ++G + + ++Q LI+LD+MLP +DG Sbjct: 1 MAHILIVEDEQSINDLIAMNLELVGHTSTQVYEGNEALEFIKQNTYSLIILDIMLPELDG 60 Query: 61 FEWMRRRRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRSVK 120 F M +PVIF+TA +L+DR+ G +LGADDYI+KPFE +ELLARI AVLRR+ + Sbjct: 61 FSLMEYVPE-NIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQR 119 Query: 121 EEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLELAWGYE 180 F V L++R + NG +ELT RE+ELLE+LI+NRNIALSREKLL+LAW Y+ Sbjct: 120 SLNIFSLDSTVVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAWEYD 179 Query: 181 FEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRLEAER 219 + G+TRTVDVHI++LRKKL WE +I TVYK+GYRLE ++ Sbjct: 180 YFGETRTVDVHIQKLRKKLNWENKIKTVYKMGYRLEVDQ 218 >A6TK02.1 A6TK02_ALKMQ Two component transcriptional regulator, winged helix family Length = 216 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 112/217 (51%), Positives = 159/217 (73%), Gaps = 1/217 (0%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M+ IL++EDE PI +LI +NL + G+ +A DGE+ Q L EKIDL+LLDVMLP DG Sbjct: 1 MSVILIIEDEDPIRELIKLNLVMAGYETLEACDGEEGLQYLNNEKIDLVLLDVMLPQQDG 60 Query: 61 FEWMRRRRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRSVK 120 + + + +P I +TAKD L D++ G E+GADDY+ KPFE +ELLAR+ VLRRS K Sbjct: 61 YTLLPKILKKNIPTIMLTAKDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSDK 120 Query: 121 EEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLELAWGYE 180 E+ + D+E+ L K+ K+G+ V+LT +EF+LL +LI+N+ +SR++LLEL WGYE Sbjct: 121 EKTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWGYE 180 Query: 181 FEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRLEA 217 FEG+TRTVD+HI++LR K+G ++I T+YK+GYR+E Sbjct: 181 FEGNTRTVDMHIQRLRNKIG-ADKIKTIYKVGYRMEG 216 >B1DGE1.1 B1DGE1_9BACL Two component transcriptional regulator, winged helix family Length = 219 Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 115/216 (53%), Positives = 162/216 (75%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M I+++ED++ ISDLI +NL+L G+ +A+ G++ Q IL DL LLD+ LP M+G Sbjct: 1 MEHIIIIEDDRAISDLIKLNLELAGYVCRQAYSGQEAQSILPDFSPDLALLDISLPDMEG 60 Query: 61 FEWMRRRRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRSVK 120 +E + R + VPVIF+TA+++L D++ G ++GADDYI+KPFE +ELLARI AVLRR + Sbjct: 61 YELLERFKRMEVPVIFLTARNALVDKVKGLKMGADDYIVKPFEAMELLARIEAVLRRYGR 120 Query: 121 EEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLELAWGYE 180 + + G +E+ L+ R + K G ++ELT +E+ELL +LI NRN ALSREK+LEL W YE Sbjct: 121 KSDRLNFGGLEIHLEERIVKKEGVIIELTMKEYELLLLLINNRNKALSREKILELVWDYE 180 Query: 181 FEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRLE 216 + G+TRTVD+HI+++RKKLGWE+ I TVYK GYRLE Sbjct: 181 YSGETRTVDIHIQKIRKKLGWEDLIKTVYKFGYRLE 216 >B0MDX5.1 B0MDX5_9FIRM Putative uncharacterized protein Length = 219 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 117/216 (54%), Positives = 152/216 (70%) Query: 1 MATILVVEDEKPISDLITMNLKLVGHRFFKAFDGEQMQQILEQEKIDLILLDVMLPVMDG 60 M IL+VEDE IS+LI MNL G+ AFDG + L+QE DLILLD+MLP +DG Sbjct: 1 MNRILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDG 60 Query: 61 FEWMRRRRHPGVPVIFITAKDSLADRITGFELGADDYIIKPFEILELLARINAVLRRSVK 120 +E M R +PVIF+TAK + D++ G + GADDY+ KPFEI ELLAR+ VLRR K Sbjct: 61 YELMDYIRPLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQK 120 Query: 121 EEEGFLAGDVEVRLQARKIYKNGQLVELTAREFELLEVLIQNRNIALSREKLLELAWGYE 180 E GD+E+ + AR + K GQ V LT +E+ELL +LIQN+NIAL R+ + E WG Sbjct: 121 TESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGSG 180 Query: 181 FEGDTRTVDVHIRQLRKKLGWEERINTVYKLGYRLE 216 + GD+RTVD+H+++LRKK+GWE +I TVYK+GYRLE Sbjct: 181 YMGDSRTVDLHVQRLRKKIGWEHKIKTVYKVGYRLE 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.142 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,249,663,524 Number of extensions: 49988222 Number of successful extensions: 240482 Number of sequences better than 1.0e-05: 26893 Number of HSP's gapped: 209081 Number of HSP's successfully gapped: 26965 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)